Variant report

Variant	rs577369590
Chromosome Location	chr1:94851578-94851579
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv871097	chr1:94850443-94941890	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv3370830	chr1:94851566-94851612	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1006801	chr1:94851579-94851602	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94846200-94854400	Enhancers	Fetal Intestine Small	intestine
2	chr1:94847400-94851800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:94849400-94851600	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr1:94849600-94851800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr1:94849600-94852200	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr1:94850000-94854000	Enhancers	Fetal Intestine Large	intestine
7	chr1:94850800-94851800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr1:94851200-94851600	Enhancers	Primary T cells from cord blood	blood
9	chr1:94851200-94851600	Active TSS	Thymus	Thymus
10	chr1:94851200-94851800	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr1:94851200-94852000	Enhancers	Stomach Mucosa	stomach
12	chr1:94851200-94852200	Enhancers	Dnd41	blood
13	chr1:94851400-94853000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr1:94851400-94853400	Enhancers	Fetal Thymus	thymus
15	chr1:94851400-94854200	Enhancers	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links