Variant report

Variant	rs57738029
Chromosome Location	chr5:15502885-15502886
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73062769	1.00[AFR][1000 genomes]
rs73062785	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv965544	chr5:15502274-15507654	Enhancers Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15499600-15503000	Active TSS	Right Atrium	heart
2	chr5:15499800-15503000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:15501200-15503000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:15501600-15512000	Weak transcription	Small Intestine	intestine
5	chr5:15501800-15503000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:15501800-15503200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:15501800-15511000	Weak transcription	Lung	lung
8	chr5:15501800-15523800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:15502000-15505000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:15502000-15511600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr5:15502000-15515000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr5:15502000-15522200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr5:15502200-15503000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr5:15502200-15503200	Enhancers	Brain Cingulate Gyrus	brain
15	chr5:15502400-15503000	Flanking Active TSS	HUVEC	blood vessel
16	chr5:15502400-15509200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:15502600-15503000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr5:15502600-15503000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr5:15502600-15503000	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr5:15502600-15503000	Flanking Active TSS	Fetal Stomach	stomach
21	chr5:15502600-15503000	Flanking Active TSS	HSMMtube	muscle
22	chr5:15502600-15503000	Flanking Active TSS	NHDF-Ad	bronchial
23	chr5:15502600-15503200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr5:15502600-15503200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr5:15502600-15503200	Enhancers	Colon Smooth Muscle	Colon
26	chr5:15502600-15503200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr5:15502600-15503400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr5:15502600-15503600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr5:15502600-15510800	Weak transcription	Aorta	Aorta
30	chr5:15502600-15522400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr5:15502600-15535400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr5:15502800-15503000	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr5:15502800-15503000	Enhancers	Muscle Satellite Cultured Cells	--
34	chr5:15502800-15503000	Enhancers	Adipose Nuclei	Adipose
35	chr5:15502800-15503000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr5:15502800-15503000	Genic enhancers	Fetal Muscle Leg	muscle
37	chr5:15502800-15503000	Flanking Active TSS	Ovary	ovary
38	chr5:15502800-15503000	Genic enhancers	NH-A	brain
39	chr5:15502800-15503000	Enhancers	NHLF	lung
40	chr5:15502800-15503000	Active TSS	Osteobl	bone
41	chr5:15502800-15503200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr5:15502800-15503200	Enhancers	HSMM	muscle
43	chr5:15502800-15503400	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr5:15502800-15503400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr5:15502800-15503400	Flanking Active TSS	Fetal Heart	heart
46	chr5:15502800-15503400	Enhancers	Fetal Lung	lung
47	chr5:15502800-15503600	Weak transcription	Brain Anterior Caudate	brain
48	chr5:15502800-15503600	Enhancers	Left Ventricle	heart
49	chr5:15502800-15503600	Weak transcription	Dnd41	blood
50	chr5:15502800-15503800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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