Variant report

Variant	rs57738170
Chromosome Location	chr9:14902091-14902092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs58533448	1.00[AMR][1000 genomes]
rs73417693	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv831518	chr9:14760638-14953501	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1018416	chr9:14846753-14921247	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv613647	chr9:14852141-15016475	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14881200-14904600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:14882000-14902400	Weak transcription	Fetal Stomach	stomach
3	chr9:14884200-14907400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:14887400-14902200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:14895200-14906200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:14897000-14902400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:14897200-14902200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr9:14897200-14902200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr9:14900000-14906200	Weak transcription	Fetal Intestine Large	intestine
10	chr9:14900200-14906600	Weak transcription	Adipose Nuclei	Adipose
11	chr9:14900200-14906600	Weak transcription	Aorta	Aorta
12	chr9:14900400-14902200	Weak transcription	Fetal Kidney	kidney
13	chr9:14900800-14904600	Weak transcription	Pancreas	Pancrea
14	chr9:14901000-14902400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr9:14901400-14902200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:14901600-14902200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:14901600-14903200	Enhancers	Colon Smooth Muscle	Colon
18	chr9:14901800-14902200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:14901800-14902400	Enhancers	HepG2	liver
20	chr9:14901800-14902800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:14901800-14902800	Enhancers	Fetal Muscle Leg	muscle
22	chr9:14902000-14902600	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr9:14902000-14902600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:14902000-14902800	Enhancers	H1 Cell Line	embryonic stem cell
25	chr9:14902000-14902800	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr9:14902000-14903200	Enhancers	Fetal Lung	lung
27	chr9:14902000-14903600	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr9:14902000-14904000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr9:14902000-14904000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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