Variant report

Variant	rs577386489
Chromosome Location	chr3:112185221-112185222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATG3-3	chr3:112184773-112185230	NONHSAT091179

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591294	chr3:112091220-112208750	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1010208	chr3:112098542-112227212	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1003936	chr3:112125931-112274613	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv998309	chr3:112130290-112278804	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv591300	chr3:112144026-112270857	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv1006065	chr3:112147080-112276983	Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv1005323	chr3:112171990-112274613	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv877342	chr3:112185025-112332629	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112179800-112189800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:112180400-112195400	Genic enhancers	Primary B cells from peripheral blood	blood
3	chr3:112181400-112185600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:112181800-112185600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr3:112182000-112185400	Enhancers	Primary hematopoietic stem cells	blood
6	chr3:112182200-112193600	Weak transcription	Spleen	Spleen
7	chr3:112182800-112186400	Weak transcription	Fetal Thymus	thymus
8	chr3:112183400-112185400	Genic enhancers	Primary B cells from cord blood	blood
9	chr3:112183600-112185400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr3:112183600-112185400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:112183600-112186400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:112183600-112186400	Weak transcription	Adipose Nuclei	Adipose
13	chr3:112183800-112186400	Weak transcription	Thymus	Thymus
14	chr3:112183800-112186800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr3:112183800-112188600	Weak transcription	HSMM	muscle
16	chr3:112183800-112195000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr3:112184000-112186400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:112184000-112186600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
19	chr3:112184000-112186800	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr3:112184200-112188000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr3:112184200-112190600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
22	chr3:112184200-112191600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr3:112184400-112185600	Genic enhancers	GM12878-XiMat	blood
24	chr3:112184600-112185400	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr3:112184600-112185600	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr3:112184600-112185600	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr3:112184600-112187200	Genic enhancers	Primary T cells from cord blood	blood
28	chr3:112184800-112185400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr3:112184800-112185800	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr3:112184800-112186400	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr3:112185000-112185400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr3:112185000-112185400	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr3:112185000-112185400	Enhancers	Brain Angular Gyrus	brain
34	chr3:112185000-112185400	Enhancers	Brain Cingulate Gyrus	brain
35	chr3:112185000-112185400	Enhancers	Brain Hippocampus Middle	brain
36	chr3:112185000-112185400	Enhancers	Brain Substantia Nigra	brain
37	chr3:112185000-112185400	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr3:112185000-112185600	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr3:112185000-112185600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr3:112185000-112190600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr3:112185000-112190600	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr3:112185200-112185600	Enhancers	H1 Cell Line	embryonic stem cell
43	chr3:112185200-112186400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr3:112185200-112186400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr3:112185200-112186400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr3:112185200-112186400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr3:112185200-112188200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr3:112185200-112190200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr3:112185200-112190400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links