Variant report

Variant	rs577387606
Chromosome Location	chr1:151292627-151292628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151290821..151293290-chr1:151295135..151297103,2	MCF-7	breast:
2	chr1:151286040..151288364-chr1:151291772..151293505,2	MCF-7	breast:
3	1:151289152-151293154..1:151411623-151426875	Hela-S3	cervix:
4	chr1:151290984..151293402-chr1:151302923..151305686,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143442	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522840	chr1:150933723-151347746	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
2	nsv916272	chr1:150961809-151557253	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases
3	esv2754960	chr1:151240542-151331304	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
4	esv34461	chr1:151240542-151411635	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
5	esv2753774	chr1:151240542-151411635	Genic enhancers Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
6	nsv831581	chr1:151289151-151478605	Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	esv16335	chr1:151291318-151293798	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151257200-151297600	Strong transcription	Dnd41	blood
2	chr1:151257600-151293600	Strong transcription	Brain Germinal Matrix	brain
3	chr1:151258200-151297200	Strong transcription	Primary B cells from peripheral blood	blood
4	chr1:151258400-151293400	Strong transcription	Fetal Brain Female	brain
5	chr1:151258400-151297800	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr1:151260000-151298000	Strong transcription	Thymus	Thymus
7	chr1:151261600-151297800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr1:151262000-151298000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:151262600-151297600	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr1:151265800-151298000	Strong transcription	Fetal Thymus	thymus
11	chr1:151271400-151298800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:151273200-151298000	Strong transcription	Primary T cells from cord blood	blood
13	chr1:151273800-151297800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr1:151274400-151295000	Strong transcription	Primary B cells from cord blood	blood
15	chr1:151280200-151299200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr1:151280400-151299000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr1:151283200-151298000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:151283200-151299000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr1:151283400-151296000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr1:151283400-151297400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr1:151284800-151292800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr1:151284800-151295200	Strong transcription	Sigmoid Colon	Sigmoid Colon
23	chr1:151285000-151297200	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr1:151285200-151295400	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr1:151285200-151297400	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr1:151285400-151294400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr1:151285600-151298000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr1:151285800-151294400	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr1:151286000-151294600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr1:151286400-151297800	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr1:151286800-151298400	Strong transcription	Fetal Intestine Large	intestine
32	chr1:151287000-151298400	Weak transcription	Small Intestine	intestine
33	chr1:151287000-151298600	Strong transcription	Fetal Muscle Trunk	muscle
34	chr1:151287200-151293000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr1:151287200-151294600	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr1:151287200-151295400	Strong transcription	Fetal Lung	lung
37	chr1:151287200-151296200	Weak transcription	Stomach Mucosa	stomach
38	chr1:151287200-151297800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr1:151287200-151298000	Weak transcription	Fetal Heart	heart
40	chr1:151287400-151293000	Weak transcription	Psoas Muscle	Psoas
41	chr1:151287400-151293600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr1:151287400-151297000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr1:151287400-151297600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr1:151287400-151298000	Strong transcription	Duodenum Mucosa	Duodenum
45	chr1:151287400-151298000	Strong transcription	Fetal Stomach	stomach
46	chr1:151287800-151293600	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr1:151287800-151297800	Strong transcription	Osteobl	bone
48	chr1:151288000-151293000	Strong transcription	K562	blood
49	chr1:151288000-151296800	Strong transcription	Liver	Liver
50	chr1:151288200-151297800	Weak transcription	Fetal Kidney	kidney

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