Variant report

Variant	rs577402959
Chromosome Location	chr4:79053930-79053931
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv520625	chr4:79002655-79071788	Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv525530	chr4:79024524-79266563	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv879502	chr4:79052851-79144309	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79047600-79057200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:79047600-79057400	Weak transcription	Pancreas	Pancrea
3	chr4:79050400-79056800	Enhancers	HepG2	liver
4	chr4:79051200-79056400	Weak transcription	Fetal Intestine Large	intestine
5	chr4:79051200-79060200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:79051600-79056600	Weak transcription	Fetal Intestine Small	intestine
7	chr4:79052200-79054000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:79052800-79054000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr4:79053000-79056800	Weak transcription	Psoas Muscle	Psoas
10	chr4:79053200-79056400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:79053200-79056600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr4:79053400-79056400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr4:79053400-79056600	Weak transcription	HSMMtube	muscle
14	chr4:79053400-79058600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:79053800-79054000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:79053800-79054000	Enhancers	H9 Cell Line	embryonic stem cell
17	chr4:79053800-79056400	Weak transcription	Fetal Heart	heart
18	chr4:79053800-79056800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr4:79053800-79057000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr4:79053800-79057000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr4:79053800-79058800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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