Variant report

Variant	rs577428484
Chromosome Location	chr6:66011376-66011377
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HEY1	chr6:66011201-66011592	HepG2	liver:	n/a	n/a
2	USF1	chr6:66011239-66011406	GM12878	blood:	n/a	n/a
3	POLR2A	chr6:66011230-66011530	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr6:66011244-66011493	HepG2	liver:	n/a	n/a
5	SIX5	chr6:66011190-66011505	GM12878	blood:	n/a	n/a
6	USF1	chr6:66011096-66011449	A549	lung:	n/a	n/a
7	TAF1	chr6:66011191-66011520	H1-hESC	embryonic stem cell:	n/a	n/a
8	TAF1	chr6:66011290-66011444	GM12892	blood:	n/a	n/a
9	POLR2A	chr6:66011292-66011493	HepG2	liver:	n/a	n/a
10	USF1	chr6:66011177-66011443	HepG2	liver:	n/a	n/a
11	POLR2A	chr6:66011228-66011621	Hela-S3	cervix:	n/a	n/a
12	POLR2A	chr6:66011149-66011626	GM12878	blood:	n/a	n/a
13	HEY1	chr6:66011291-66011512	HepG2	liver:	n/a	n/a
14	POLR2A	chr6:66011247-66011486	GM12878	blood:	n/a	n/a
15	USF1	chr6:66011099-66011428	A549	lung:	n/a	n/a
16	YY1	chr6:66011245-66011490	A549	lung:	n/a	chr6:66011351-66011359 chr6:66011348-66011370 chr6:66011346-66011365
17	JUND	chr6:66011285-66011442	HepG2	liver:	n/a	n/a
18	POLR2A	chr6:66011201-66011654	GM12891	blood:	n/a	n/a
19	YY1	chr6:66011190-66011519	A549	lung:	n/a	chr6:66011351-66011359 chr6:66011348-66011370 chr6:66011346-66011365
20	POLR2A	chr6:66011226-66011690	GM12892	blood:	n/a	n/a
21	POLR2A	chr6:66011127-66011642	SK-N-MC	brain:	n/a	n/a
22	POLR2A	chr6:66011092-66011771	H1-hESC	embryonic stem cell:	n/a	n/a
23	GABPA	chr6:66011197-66011389	Hela-S3	cervix:	n/a	n/a
24	POU2F2	chr6:66011274-66011487	GM12878	blood:	n/a	n/a
25	TAF1	chr6:66011163-66011574	Hela-S3	cervix:	n/a	n/a
26	USF1	chr6:66011203-66011491	A549	lung:	n/a	n/a
27	POLR2A	chr6:66011270-66011527	PFSK-1	brain:	n/a	n/a
28	HEY1	chr6:66011218-66011588	K562	blood:	n/a	n/a
29	POLR2A	chr6:66011139-66011617	GM12891	blood:	n/a	n/a
30	POLR2A	chr6:66011279-66011573	GM12891	blood:	n/a	n/a
31	TAF1	chr6:66011211-66011470	GM12891	blood:	n/a	n/a
32	POLR2A	chr6:66011285-66011481	A549	lung:	n/a	n/a
33	TAF1	chr6:66011212-66011498	GM12878	blood:	n/a	n/a
34	GABPA	chr6:66011243-66011456	GM12878	blood:	n/a	n/a
35	POLR2A	chr6:66011095-66011694	GM12892	blood:	n/a	n/a
36	POLR2A	chr6:66011211-66011596	Hela-S3	cervix:	n/a	n/a
37	POLR2A	chr6:66011188-66011520	H1-hESC	embryonic stem cell:	n/a	n/a
38	SIX5	chr6:66011105-66011511	K562	blood:	n/a	n/a
39	POLR2A	chr6:66011240-66011492	GM12878	blood:	n/a	n/a
40	POLR2A	chr6:66011285-66011474	HepG2	liver:	n/a	n/a
41	TAF1	chr6:66011239-66011485	GM12891	blood:	n/a	n/a
42	TAF1	chr6:66011155-66011610	H1-hESC	embryonic stem cell:	n/a	n/a
43	POLR2A	chr6:66011212-66011608	GM12892	blood:	n/a	n/a
44	POLR2A	chr6:66011297-66011472	A549	lung:	n/a	n/a
45	POLR2A	chr6:66011279-66011561	GM12878	blood:	n/a	n/a
46	SIN3AK20	chr6:66011280-66011454	HepG2	liver:	n/a	n/a
47	USF1	chr6:66011193-66011522	A549	lung:	n/a	n/a
48	POU2F2	chr6:66011186-66011529	GM12878	blood:	n/a	n/a
49	POLR2A	chr6:66011224-66011506	A549	lung:	n/a	n/a
50	HEY1	chr6:66011204-66011645	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000214558	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930945	chr6:65814264-66045031	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv933353	chr6:65814264-66045031	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv886011	chr6:65873577-66237309	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv886012	chr6:65905998-66354809	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	esv2752619	chr6:65917536-66062893	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv886013	chr6:65918809-66050797	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv933487	chr6:65947165-66134134	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv516417	chr6:65952526-66083780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv470823	chr6:65969239-66052674	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv886014	chr6:65996855-66061173	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv603431	chr6:66002389-66052675	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
12	nsv886015	chr6:66002389-66061173	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
13	nsv886016	chr6:66002389-66103595	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
14	nsv886017	chr6:66002887-66049528	Enhancers	TF binding region CpG island lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
15	nsv603432	chr6:66006148-66052675	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
16	nsv462978	chr6:66006820-66072542	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
17	nsv462979	chr6:66006820-66072542	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
18	nsv603433	chr6:66006820-66072542	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
19	nsv886018	chr6:66009103-66091351	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
20	nsv886019	chr6:66009103-66103595	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
21	nsv981155	chr6:66011313-66035737	Enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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