Variant report

Variant	rs577434493
Chromosome Location	chr11:8944423-8944424
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8941546..8948177-chr11:8950032..8955141,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176029	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv435923	chr11:8839325-9000602	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv832062	chr11:8849295-9009472	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	esv3328524	chr11:8944377-8944745	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8933400-8947800	Weak transcription	Small Intestine	intestine
2	chr11:8934000-8952200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:8934200-8948800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:8936200-8945800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr11:8936400-8946000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:8936400-8946800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr11:8936400-8951200	Weak transcription	Right Atrium	heart
8	chr11:8936600-8945000	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:8936600-8945800	Weak transcription	Stomach Mucosa	stomach
10	chr11:8936600-8946600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr11:8936600-8948600	Strong transcription	Fetal Thymus	thymus
12	chr11:8936600-8949000	Strong transcription	Fetal Stomach	stomach
13	chr11:8936600-8954000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:8936800-8947000	Strong transcription	Dnd41	blood
15	chr11:8936800-8947600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr11:8937000-8947600	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr11:8937000-8948200	Strong transcription	Fetal Brain Female	brain
18	chr11:8937200-8945000	Strong transcription	Brain Angular Gyrus	brain
19	chr11:8937200-8947400	Strong transcription	Thymus	Thymus
20	chr11:8937600-8944800	Strong transcription	Hela-S3	cervix
21	chr11:8937800-8947400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:8938000-8944600	Strong transcription	Brain Inferior Temporal Lobe	brain
23	chr11:8938000-8944800	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr11:8938000-8944800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr11:8938000-8944800	Strong transcription	Fetal Intestine Large	intestine
26	chr11:8938000-8945000	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr11:8938000-8945000	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr11:8938000-8945800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:8938000-8946400	Strong transcription	Brain Hippocampus Middle	brain
30	chr11:8938000-8946600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr11:8938000-8946800	Strong transcription	Liver	Liver
32	chr11:8938000-8947400	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr11:8938000-8947600	Strong transcription	Brain Cingulate Gyrus	brain
34	chr11:8938200-8944800	Strong transcription	Duodenum Mucosa	Duodenum
35	chr11:8938200-8947000	Strong transcription	Brain Anterior Caudate	brain
36	chr11:8938200-8947200	Strong transcription	Brain Germinal Matrix	brain
37	chr11:8938400-8945000	Strong transcription	Brain Substantia Nigra	brain
38	chr11:8938400-8945000	Strong transcription	Right Ventricle	heart
39	chr11:8938400-8946800	Strong transcription	Fetal Muscle Trunk	muscle
40	chr11:8938600-8944800	Strong transcription	Placenta	Placenta
41	chr11:8938600-8945000	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr11:8938600-8945200	Strong transcription	H9 Cell Line	embryonic stem cell
43	chr11:8938600-8946600	Weak transcription	Psoas Muscle	Psoas
44	chr11:8939000-8944800	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr11:8939000-8945200	Strong transcription	A549	lung
46	chr11:8939000-8946200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr11:8939000-8947400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:8939000-8947600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr11:8939000-8948200	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr11:8939200-8945000	Strong transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links