Variant report

Variant	rs577448108
Chromosome Location	chr14:42070511-42070512
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047300	chr14:41671653-42361098	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1831164	chr14:41673017-42103168	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv533968	chr14:41882101-42327882	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1042078	chr14:41993985-42120143	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2758353	chr14:42045873-42259511	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2759983	chr14:42045873-42259511	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3450670	chr14:42070274-42070652	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:42067000-42074000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:42067200-42073400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:42067200-42073800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:42067400-42073600	Weak transcription	Placenta	Placenta
5	chr14:42068400-42071400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr14:42069200-42070600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:42069600-42070800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr14:42069600-42070800	Weak transcription	Fetal Muscle Leg	muscle
9	chr14:42069600-42072200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:42069600-42073000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr14:42069800-42070800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr14:42069800-42071000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr14:42069800-42071000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr14:42069800-42071800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr14:42069800-42072000	Enhancers	Fetal Lung	lung
16	chr14:42069800-42072200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr14:42069800-42073800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr14:42070200-42070600	Enhancers	Fetal Muscle Trunk	muscle
19	chr14:42070200-42070800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr14:42070200-42070800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr14:42070200-42071000	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr14:42070200-42071800	Weak transcription	Fetal Heart	heart
23	chr14:42070200-42076800	Active TSS	ES-I3 Cell Line	embryonic stem cell
24	chr14:42070400-42070600	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links