Variant report

Variant	rs57746662
Chromosome Location	chr11:33733095-33733096
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:33733041-33733241	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr11:33732341-33733457	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:33730241..33733771-chr11:33754827..33758431,3	K562	blood:
2	chr11:33726536..33728687-chr11:33732022..33734323,2	K562	blood:
3	chr11:33731840..33734773-chr11:33739797..33742664,2	K562	blood:

Variant related genes	Relation type
CD59	TF binding region
ENSG00000085063	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11032326	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33723000-33746000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:33723200-33737400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:33723200-33744400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:33723200-33744400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr11:33723400-33735000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:33723400-33741400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr11:33723400-33745000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:33723400-33745800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr11:33723400-33746000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr11:33723400-33753400	Weak transcription	Primary B cells from cord blood	blood
11	chr11:33726000-33733200	Strong transcription	Fetal Stomach	stomach
12	chr11:33726400-33739800	Strong transcription	Fetal Muscle Trunk	muscle
13	chr11:33726600-33734200	Strong transcription	K562	blood
14	chr11:33726800-33736000	Strong transcription	HSMMtube	muscle
15	chr11:33726800-33741400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:33727000-33735000	Strong transcription	NH-A	brain
17	chr11:33727000-33738200	Strong transcription	HSMM	muscle
18	chr11:33728200-33736000	Strong transcription	Fetal Thymus	thymus
19	chr11:33728200-33744000	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr11:33728400-33744600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:33728600-33736000	Strong transcription	Duodenum Smooth Muscle	Duodenum
22	chr11:33728600-33738200	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr11:33728600-33745000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr11:33729200-33737000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:33729200-33740000	Strong transcription	Fetal Muscle Leg	muscle
26	chr11:33729200-33742400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:33729200-33743200	Strong transcription	GM12878-XiMat	blood
28	chr11:33729600-33735400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:33729600-33736400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr11:33729800-33736400	Strong transcription	Placenta	Placenta
31	chr11:33729800-33742400	Strong transcription	Osteobl	bone
32	chr11:33730000-33733200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr11:33730000-33734200	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr11:33730200-33733200	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr11:33730400-33736400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:33730600-33734400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:33731000-33741400	Weak transcription	Fetal Brain Male	brain
38	chr11:33731200-33733200	Strong transcription	Fetal Intestine Small	intestine
39	chr11:33731200-33736400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:33731200-33736800	Strong transcription	NHEK	skin
41	chr11:33731400-33733200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr11:33731400-33733400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:33731400-33734600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr11:33731400-33736200	Strong transcription	NHDF-Ad	bronchial
45	chr11:33731400-33736600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:33731600-33734000	Weak transcription	Fetal Heart	heart
47	chr11:33731600-33734800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:33731600-33736000	Strong transcription	HMEC	breast
49	chr11:33731600-33737000	Strong transcription	Adipose Nuclei	Adipose
50	chr11:33731800-33733400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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