Variant report

Variant	rs577490000
Chromosome Location	chr15:73301605-73301606
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	esv3409112	chr15:73301065-73301613	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73298400-73303200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr15:73299800-73302400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:73301200-73303200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:73301400-73301800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr15:73301400-73302200	Enhancers	Fetal Lung	lung
6	chr15:73301400-73303200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:73301400-73303400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr15:73301400-73303600	Enhancers	Fetal Stomach	stomach
9	chr15:73301400-73303600	Enhancers	HMEC	breast
10	chr15:73301600-73301800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:73301600-73301800	Enhancers	NHEK	skin
12	chr15:73301600-73302200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:73301600-73302200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:73301600-73303200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:73301600-73303200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:73301600-73303400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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