Variant report

Variant	rs57749959
Chromosome Location	chr12:104107582-104107583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10745985	1.00[ASN][1000 genomes]
rs10861111	1.00[ASN][1000 genomes]
rs1165595	1.00[ASN][1000 genomes]
rs11835383	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11837927	1.00[EUR][1000 genomes]
rs12303536	1.00[ASN][1000 genomes]
rs12823195	1.00[ASN][1000 genomes]
rs17034422	1.00[EUR][1000 genomes]
rs2576956	1.00[ASN][1000 genomes]
rs2576959	1.00[ASN][1000 genomes]
rs2576968	1.00[ASN][1000 genomes]
rs34614451	0.95[EUR][1000 genomes]
rs35285727	1.00[EUR][1000 genomes]
rs35642814	1.00[ASN][1000 genomes]
rs36071014	0.95[EUR][1000 genomes]
rs4964197	1.00[ASN][1000 genomes]
rs59079260	1.00[EUR][1000 genomes]
rs61601185	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61939568	1.00[ASN][1000 genomes]
rs71466284	1.00[ASN][1000 genomes]
rs73175816	1.00[ASN][1000 genomes]
rs7973736	1.00[ASN][1000 genomes]
rs931530	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9669259	1.00[ASN][1000 genomes]
rs9669708	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899479	chr12:104092996-104138918	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv899480	chr12:104092996-104211440	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv899481	chr12:104092996-104213731	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv899482	chr12:104092996-104218956	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104104400-104111000	Weak transcription	Spleen	Spleen
2	chr12:104106000-104108800	Weak transcription	HSMMtube	muscle
3	chr12:104106400-104109600	Weak transcription	Left Ventricle	heart
4	chr12:104106800-104108800	Weak transcription	HSMM	muscle
5	chr12:104107400-104107600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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