Variant report

Variant	rs577503581
Chromosome Location	chr19:44764854-44764855
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr19:44763798-44765474	HEK293-T-REx	kidney:	n/a	n/a
2	MAX	chr19:44763851-44764954	A549	lung:	n/a	n/a
3	MXI1	chr19:44763647-44765418	SK-N-SH	brain:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:44764453..44767160-chr19:44768719..44770239,2	K562	blood:
2	chr19:44763153..44765827-chr19:44767005..44769957,2	MCF-7	breast:
3	chr19:44762662..44765169-chr19:44806024..44808707,2	K562	blood:
4	chr19:44763689..44765733-chr19:44807177..44810075,2	MCF-7	breast:
5	chr19:44764212..44765954-chr19:44776988..44779803,2	MCF-7	breast:
6	chr19:44763163..44765702-chr19:44978103..44979674,2	MCF-7	breast:

No data

Variant related genes	Relation type
ZNF233	TF binding region
ENSG00000159917	Chromatin interaction
ENSG00000267242	Chromatin interaction
ENSG00000159915	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521923	chr19:44764064-44769974	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44729800-44768600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:44730000-44775600	ZNF genes & repeats	Liver	Liver
3	chr19:44763400-44765400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:44763600-44765000	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr19:44763600-44765000	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr19:44763600-44765000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr19:44763600-44765000	Active TSS	Brain Hippocampus Middle	brain
8	chr19:44763600-44765200	Active TSS	Duodenum Mucosa	Duodenum
9	chr19:44763800-44765000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr19:44763800-44765000	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr19:44763800-44765000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
12	chr19:44763800-44765000	Active TSS	Brain Cingulate Gyrus	brain
13	chr19:44763800-44765000	ZNF genes & repeats	Esophagus	oesophagus
14	chr19:44763800-44765000	Active TSS	GM12878-XiMat	blood
15	chr19:44763800-44765200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
16	chr19:44763800-44765200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr19:44763800-44765200	Active TSS	Skeletal Muscle Male	skeletal muscle
18	chr19:44763800-44765400	Active TSS	Brain Anterior Caudate	brain
19	chr19:44763800-44765400	Active TSS	Rectal Smooth Muscle	rectum
20	chr19:44764000-44765000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr19:44764000-44765000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr19:44764000-44765000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
23	chr19:44764000-44765000	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
24	chr19:44764200-44765000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr19:44764200-44765000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr19:44764200-44765000	Flanking Active TSS	NHDF-Ad	bronchial
27	chr19:44764400-44765000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr19:44764400-44765000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr19:44764400-44765000	Flanking Active TSS	Fetal Brain Male	brain
30	chr19:44764400-44765000	Flanking Active TSS	Fetal Brain Female	brain
31	chr19:44764400-44765400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr19:44764600-44765000	Flanking Active TSS	H9 Cell Line	embryonic stem cell
33	chr19:44764600-44765000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr19:44764600-44765000	Enhancers	Primary B cells from peripheral blood	blood
35	chr19:44764600-44765000	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr19:44764600-44765000	Flanking Active TSS	Brain Germinal Matrix	brain
37	chr19:44764600-44765000	Enhancers	Fetal Heart	heart
38	chr19:44764600-44765000	Flanking Active TSS	Fetal Intestine Large	intestine
39	chr19:44764600-44765000	Enhancers	Fetal Lung	lung
40	chr19:44764600-44765000	Enhancers	Fetal Thymus	thymus
41	chr19:44764600-44765000	Enhancers	Small Intestine	intestine
42	chr19:44764600-44765000	Enhancers	HMEC	breast
43	chr19:44764600-44765200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr19:44764600-44765200	ZNF genes & repeats	Colon Smooth Muscle	Colon
45	chr19:44764600-44765400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr19:44764600-44765400	Enhancers	Hela-S3	cervix
47	chr19:44764600-44766600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr19:44764600-44770000	Weak transcription	Fetal Kidney	kidney
49	chr19:44764600-44771000	Weak transcription	Psoas Muscle	Psoas
50	chr19:44764600-44778200	Weak transcription	HSMMtube	muscle

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