Variant report

Variant	rs577509286
Chromosome Location	chr6:120905883-120905884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753290	chr6:120309301-120979301	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	esv2752474	chr6:120309301-120982301	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv428495	chr6:120861159-120954224	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3396982	chr6:120900302-120916167	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120905200-120906200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr6:120905400-120906000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:120905400-120906000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr6:120905400-120906000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:120905400-120906000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:120905400-120906000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:120905600-120906000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr6:120905600-120909800	Enhancers	Brain Germinal Matrix	brain
9	chr6:120905800-120908200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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