Variant report

Variant	rs577516901
Chromosome Location	chr3:105555786-105555787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:105553976..105556329-chr3:105573888..105575863,2	MCF-7	breast:
2	chr3:105552724..105554590-chr3:105555325..105557862,2	K562	blood:
3	chr3:105552676..105554224-chr3:105555679..105557862,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755185	chr3:105378310-105597310	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv508234	chr3:105549864-105565806	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1008564	chr3:105554580-105643435	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1008876	chr3:105554580-105645373	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105511400-105566400	Weak transcription	Aorta	Aorta
2	chr3:105532200-105563000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:105533600-105560600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:105533800-105570000	Weak transcription	Dnd41	blood
5	chr3:105534200-105566200	Weak transcription	Brain Germinal Matrix	brain
6	chr3:105540800-105569600	Weak transcription	Fetal Thymus	thymus
7	chr3:105542600-105566000	Weak transcription	Fetal Stomach	stomach
8	chr3:105543400-105555800	Weak transcription	HepG2	liver
9	chr3:105543400-105560800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr3:105543400-105581200	Weak transcription	Gastric	stomach
11	chr3:105543600-105557200	Weak transcription	Fetal Intestine Large	intestine
12	chr3:105543800-105571000	Weak transcription	Lung	lung
13	chr3:105544200-105559200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr3:105544200-105584600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:105546600-105586200	Weak transcription	Esophagus	oesophagus
16	chr3:105546800-105560800	Weak transcription	Fetal Muscle Leg	muscle
17	chr3:105547200-105557400	Weak transcription	Fetal Intestine Small	intestine
18	chr3:105547400-105557200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr3:105547800-105557400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr3:105548400-105561200	Weak transcription	K562	blood
21	chr3:105548400-105561400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr3:105548600-105559600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:105549000-105560800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr3:105549000-105571800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:105549200-105564400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:105549400-105557200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr3:105549600-105558000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:105549800-105556000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr3:105550000-105562600	Weak transcription	HUVEC	blood vessel
30	chr3:105550000-105569600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr3:105551000-105556800	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr3:105551800-105556600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:105551800-105560800	Weak transcription	Primary hematopoietic stem cells	blood
34	chr3:105552800-105556600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr3:105553400-105555800	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr3:105553400-105556200	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr3:105553400-105564000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr3:105553600-105555800	Genic enhancers	Osteobl	bone
39	chr3:105553600-105556400	Enhancers	Fetal Brain Female	brain
40	chr3:105553600-105556400	Enhancers	Fetal Heart	heart
41	chr3:105553600-105556400	Enhancers	Fetal Kidney	kidney
42	chr3:105553600-105557000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr3:105553600-105557000	Enhancers	Liver	Liver
44	chr3:105553800-105556000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr3:105553800-105556400	Enhancers	Colon Smooth Muscle	Colon
46	chr3:105553800-105557000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr3:105553800-105557600	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr3:105554000-105556200	Enhancers	A549	lung
49	chr3:105554000-105566400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr3:105554200-105555800	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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