Variant report

Variant	rs577520812
Chromosome Location	chr6:15662912-15662913
allele	-/GGCGG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15661311..15664347-chr6:16127901..16131243,6	K562	blood:
2	chr6:15659552..15664792-chr6:16126837..16130644,6	MCF-7	breast:
3	chr6:15661088..15663422-chr6:16128985..16131574,3	K562	blood:
4	chr6:15655170..15659272-chr6:15659508..15662983,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3373756	chr6:15661798-15664346	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15661800-15663400	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr6:15661800-15663400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:15661800-15663600	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr6:15662000-15663400	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:15662000-15663400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr6:15662000-15663400	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr6:15662000-15663400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:15662000-15663400	Active TSS	Fetal Kidney	kidney
9	chr6:15662000-15663400	Active TSS	NHDF-Ad	bronchial
10	chr6:15662000-15663600	Active TSS	H9 Cell Line	embryonic stem cell
11	chr6:15662000-15663600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:15662000-15663600	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr6:15662000-15663600	Active TSS	Muscle Satellite Cultured Cells	--
14	chr6:15662000-15663600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:15662000-15663600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:15662000-15663600	Active TSS	Brain Angular Gyrus	brain
17	chr6:15662000-15663600	Active TSS	Brain Anterior Caudate	brain
18	chr6:15662000-15663600	Active TSS	Right Ventricle	heart
19	chr6:15662000-15663600	Active TSS	Stomach Smooth Muscle	stomach
20	chr6:15662000-15663800	Flanking Active TSS	Primary B cells from cord blood	blood
21	chr6:15662000-15663800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:15662200-15663200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:15662200-15663200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:15662200-15663200	Active TSS	Small Intestine	intestine
25	chr6:15662200-15663400	Active TSS	iPS-15b Cell Line	embryonic stem cell
26	chr6:15662200-15663400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:15662200-15663400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:15662200-15663400	Active TSS	Pancreas	Pancrea
29	chr6:15662200-15663600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:15662200-15663600	Active TSS	A549	lung
31	chr6:15662200-15663600	Active TSS	NHEK	skin
32	chr6:15662200-15663800	Active TSS	Aorta	Aorta
33	chr6:15662200-15663800	Active TSS	Ovary	ovary
34	chr6:15662200-15663800	Active TSS	NHLF	lung
35	chr6:15662400-15663200	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
36	chr6:15662400-15663200	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:15662400-15663400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:15662400-15663400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:15662400-15663400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr6:15662400-15663400	Active TSS	HUES64 Cell Line	embryonic stem cell
41	chr6:15662400-15663400	Active TSS	iPS-18 Cell Line	embryonic stem cell
42	chr6:15662400-15663400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:15662400-15663400	Active TSS	Primary T cells from cord blood	blood
44	chr6:15662400-15663400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
45	chr6:15662400-15663400	Active TSS	Primary T helper naive cells from peripheral blood	blood
46	chr6:15662400-15663400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
47	chr6:15662400-15663400	Active TSS	Primary T killer memory cells from peripheral blood	blood
48	chr6:15662400-15663400	Enhancers	Fetal Brain Male	brain
49	chr6:15662400-15663400	Active TSS	Fetal Intestine Large	intestine
50	chr6:15662400-15663400	Active TSS	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links