Variant report

Variant	rs57753855
Chromosome Location	chr15:56631701-56631702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs28404413	0.89[AMR][1000 genomes]
rs34807682	0.81[AMR][1000 genomes]
rs61173192	0.81[AMR][1000 genomes]
rs7167275	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7176127	1.00[AMR][1000 genomes]
rs73413997	1.00[AMR][1000 genomes]
rs73415843	1.00[AMR][1000 genomes]
rs768960	1.00[AMR][1000 genomes]
rs795778	0.81[AMR][1000 genomes]
rs8026111	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56620800-56637600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:56630600-56632000	Weak transcription	Stomach Mucosa	stomach
3	chr15:56630600-56633200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:56631600-56635400	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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