Variant report

Variant	rs577541570
Chromosome Location	chr13:50274290-50274291
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916093	chr13:50050919-50290245	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv900071	chr13:50107289-50286218	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv900072	chr13:50266109-50381016	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv819200	chr13:50272099-50274553	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
5	nsv983586	chr13:50273632-50274324	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50266000-50278200	Weak transcription	Lung	lung
2	chr13:50266000-50284200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:50266200-50274400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr13:50266200-50275000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr13:50266200-50275000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr13:50266200-50275000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr13:50266200-50275000	Weak transcription	Fetal Brain Male	brain
8	chr13:50266200-50275000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr13:50266200-50275000	Weak transcription	Thymus	Thymus
10	chr13:50266200-50275000	Weak transcription	GM12878-XiMat	blood
11	chr13:50266200-50275000	Weak transcription	Hela-S3	cervix
12	chr13:50266200-50275000	Weak transcription	NHDF-Ad	bronchial
13	chr13:50266200-50275200	Weak transcription	Brain Hippocampus Middle	brain
14	chr13:50266200-50275200	Weak transcription	HSMMtube	muscle
15	chr13:50266200-50275400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr13:50266200-50275400	Weak transcription	Brain Substantia Nigra	brain
17	chr13:50266200-50275400	Weak transcription	Fetal Kidney	kidney
18	chr13:50266200-50275400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr13:50266200-50275400	Weak transcription	Right Ventricle	heart
20	chr13:50266200-50275400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr13:50266200-50275600	Weak transcription	Fetal Lung	lung
22	chr13:50266200-50279200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr13:50266200-50279400	Weak transcription	Brain Angular Gyrus	brain
24	chr13:50266200-50279400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr13:50266200-50282200	Weak transcription	Brain Germinal Matrix	brain
26	chr13:50266200-50285600	Weak transcription	NHLF	lung
27	chr13:50266200-50286000	Weak transcription	Psoas Muscle	Psoas
28	chr13:50266200-50289400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr13:50266200-50289600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr13:50266200-50295200	Weak transcription	Spleen	Spleen
31	chr13:50266200-50296000	Weak transcription	K562	blood
32	chr13:50266200-50298600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr13:50266200-50298800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr13:50266200-50307800	Weak transcription	Gastric	stomach
35	chr13:50266200-50316000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr13:50266400-50274400	Weak transcription	HepG2	liver
37	chr13:50266400-50274600	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr13:50266400-50274800	Weak transcription	Primary B cells from cord blood	blood
39	chr13:50266400-50274800	Weak transcription	Duodenum Mucosa	Duodenum
40	chr13:50266400-50274800	Weak transcription	HMEC	breast
41	chr13:50266400-50275000	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr13:50266400-50275000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr13:50266400-50275000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr13:50266400-50275000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr13:50266400-50275000	Weak transcription	Brain Anterior Caudate	brain
46	chr13:50266400-50275000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr13:50266400-50275000	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr13:50266400-50275200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr13:50266400-50275200	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr13:50266400-50275400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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