Variant report

Variant	rs577548693
Chromosome Location	chr11:120650001-120650002
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv982961	chr11:120649840-120656069	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120646600-120650800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:120647800-120652200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:120647800-120653400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:120648400-120651200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:120648400-120651400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:120648800-120650200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:120648800-120650600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr11:120648800-120650600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr11:120648800-120650800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr11:120648800-120650800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr11:120649000-120650600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:120649000-120650800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr11:120649400-120650400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:120649400-120652000	Enhancers	HUVEC	blood vessel
15	chr11:120649600-120650400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:120649600-120650800	Enhancers	H9 Cell Line	embryonic stem cell
17	chr11:120649600-120652400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr11:120649600-120653400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:120649800-120653400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr11:120649800-120653400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:120650000-120654000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links