Variant report

Variant	rs577600539
Chromosome Location	chr6:144452850-144452851
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr6:144452518-144452909	GM12878	blood:	n/a	n/a
2	GATA3	chr6:144452339-144452958	SK-N-SH	brain:	n/a	chr6:144452550-144452559 chr6:144452353-144452361
3	EP300	chr6:144452183-144452863	SK-N-SH	brain:	n/a	n/a
4	FOS	chr6:144452376-144452866	MCF10A-Er-Src	breast:	n/a	chr6:144452552-144452560
5	PBX3	chr6:144452244-144452888	SK-N-SH	brain:	n/a	n/a
6	SRF	chr6:144452263-144452974	HCT-116	colon:	n/a	n/a
7	FOS	chr6:144452366-144452856	MCF10A-Er-Src	breast:	n/a	chr6:144452552-144452560
8	STAT3	chr6:144452399-144452882	MCF10A-Er-Src	breast:	n/a	n/a
9	CBX3	chr6:144452357-144452967	HCT-116	colon:	n/a	n/a
10	JUND	chr6:144452110-144452926	HCT-116	colon:	n/a	chr6:144452607-144452618 chr6:144452552-144452560
11	TCF12	chr6:144452215-144452914	SK-N-SH	brain:	n/a	n/a
12	FOS	chr6:144452347-144452861	MCF10A-Er-Src	breast:	n/a	chr6:144452552-144452560
13	JUND	chr6:144452021-144452882	SK-N-SH	brain:	n/a	chr6:144452607-144452618 chr6:144452552-144452560
14	JUND	chr6:144452220-144452987	HCT-116	colon:	n/a	chr6:144452607-144452618 chr6:144452552-144452560
15	CEBPB	chr6:144452325-144452939	HCT-116	colon:	n/a	n/a
16	GATA3	chr6:144452360-144452861	A549	lung:	n/a	chr6:144452550-144452559
17	FOS	chr6:144452332-144452917	MCF10A-Er-Src	breast:	n/a	chr6:144452552-144452560
18	FOSL2	chr6:144452281-144452885	A549	lung:	n/a	chr6:144452552-144452560
19	NFIC	chr6:144452329-144453025	GM12878	blood:	n/a	n/a
20	PBX3	chr6:144452263-144452862	SK-N-SH	brain:	n/a	n/a
21	TEAD4	chr6:144452279-144452872	SK-N-SH	brain:	n/a	n/a
22	GATA3	chr6:144452207-144452907	SK-N-SH	brain:	n/a	chr6:144452550-144452559 chr6:144452353-144452361
23	SP1	chr6:144452224-144452991	HCT-116	colon:	n/a	n/a
24	JUND	chr6:144452348-144452915	SK-N-SH	brain:	n/a	chr6:144452607-144452618 chr6:144452552-144452560
25	NFATC1	chr6:144452359-144452885	GM12878	blood:	n/a	n/a
26	PRDM1	chr6:144452314-144452875	Hela-S3	cervix:	n/a	chr6:144452715-144452729
27	MYC	chr6:144452402-144452869	MCF10A-Er-Src	breast:	n/a	n/a
28	FOS	chr6:144452188-144452868	HUVEC	blood vessel:	n/a	chr6:144452552-144452560
29	FOSL2	chr6:144452266-144452912	SK-N-SH	brain:	n/a	chr6:144452552-144452560
30	JUND	chr6:144452208-144452918	SK-N-SH	brain:	n/a	chr6:144452552-144452560 chr6:144452607-144452618
31	TCF12	chr6:144452378-144452940	SK-N-SH	brain:	n/a	n/a
32	FOSL1	chr6:144452145-144452916	HCT-116	colon:	n/a	chr6:144452552-144452560
33	CEBPB	chr6:144452447-144452854	A549	lung:	n/a	n/a
34	FOSL1	chr6:144452140-144453056	HCT-116	colon:	n/a	chr6:144452552-144452560
35	SP1	chr6:144452312-144452993	HCT-116	colon:	n/a	n/a
36	NFIC	chr6:144452270-144452930	ECC-1	luminal epithelium:	n/a	n/a
37	RUNX3	chr6:144452418-144452946	GM12878	blood:	n/a	n/a
38	FOSL2	chr6:144452354-144452870	MCF-7	breast:	n/a	chr6:144452552-144452560
39	NFIC	chr6:144452238-144452886	SK-N-SH	brain:	n/a	n/a
40	BCL11A	chr6:144452482-144452860	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
MRPL42P3	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449955	chr6:144452509-144454707	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2426838	chr6:144452778-144454341	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144451000-144453000	Enhancers	HMEC	breast
2	chr6:144451200-144453000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:144451200-144453000	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr6:144451200-144453000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:144451200-144460400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:144451600-144453000	Enhancers	GM12878-XiMat	blood
7	chr6:144451800-144453000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:144451800-144453000	Enhancers	NHDF-Ad	bronchial
9	chr6:144451800-144453000	Enhancers	Osteobl	bone
10	chr6:144451800-144453200	Enhancers	HUVEC	blood vessel
11	chr6:144452000-144453000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:144452000-144453000	Enhancers	NH-A	brain
13	chr6:144452000-144453200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:144452000-144453200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:144452400-144453000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:144452400-144453200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:144452400-144456200	Weak transcription	NHLF	lung
18	chr6:144452600-144453000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:144452600-144453000	Enhancers	NHEK	skin

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