Variant report

Variant	rs577609795
Chromosome Location	chr1:158322845-158322846
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:122)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:158322841-158322891	NT2-D1	testis:	n/a
2	chr1:158322845-158322895	ovcar-3	ovarian:	n/a
3	chr1:158322841-158322891	A549	lung:	n/a
4	chr1:158322845-158322895	A549	lung:	n/a
5	chr1:158322845-158322895	U87	brain:	n/a
6	chr1:158322845-158322895	HEEpiC	esophagus:	n/a
7	chr1:158322841-158322891	ECC-1	luminal epithelium:	n/a
8	chr1:158322841-158322891	HMEC	breast:	n/a
9	chr1:158322845-158322895	HUVEC	blood vessel:	n/a
10	chr1:158322841-158322891	SK-N-SH	brain:	n/a
11	chr1:158322841-158322891	HIPEpiC	eye:	n/a
12	chr1:158322845-158322895	NT2-D1	testis:	n/a
13	chr1:158322845-158322895	HCPEpiC	choroid plexus:	n/a
14	chr1:158322845-158322895	Jurkat	blood:	n/a
15	chr1:158322845-158322895	HIPEpiC	eye:	n/a
16	chr1:158322841-158322891	GM12891	blood:	n/a
17	chr1:158322841-158322891	AG09319	gingival:	n/a
18	chr1:158322841-158322891	Jurkat	blood:	n/a
19	chr1:158322845-158322895	AoSMC	blood vessel:	n/a
20	chr1:158322841-158322891	PrEC	prostate:	n/a
21	chr1:158322841-158322891	Hepatocyte	liver:	n/a
22	chr1:158322841-158322891	NB4	blood:	n/a
23	chr1:158322841-158322891	GM06990	blood:	n/a
24	chr1:158322845-158322895	PFSK-1	brain:	n/a
25	chr1:158322841-158322891	ProgFib	skin:	n/a
26	chr1:158322841-158322891	Caco-2	colon:	n/a
27	chr1:158322841-158322891	SAEC	small airway:	n/a
28	chr1:158322845-158322895	RPTEC	kidney:	n/a
29	chr1:158322841-158322891	ovcar-3	ovarian:	n/a
30	chr1:158322845-158322895	GM19239	blood:	n/a
31	chr1:158322841-158322891	AG04449	skin:	fetal
32	chr1:158322841-158322891	SK-N-MC	brain:	n/a
33	chr1:158322841-158322891	MCF10A-Er-Src	breast:	n/a
34	chr1:158322841-158322891	AG10803	skin:	n/a
35	chr1:158322841-158322891	BJ	skin:	n/a
36	chr1:158322845-158322895	SK-N-MC	brain:	n/a
37	chr1:158322845-158322895	BJ	skin:	n/a
38	chr1:158322845-158322895	ECC-1	luminal epithelium:	n/a
39	chr1:158322841-158322891	HUVEC	blood vessel:	n/a
40	chr1:158322845-158322895	H1-hESC	embryonic stem cell:	embryo
41	chr1:158322845-158322895	HRPEpiC	eye:	n/a
42	chr1:158322841-158322891	GM12892	blood:	n/a
43	chr1:158322841-158322891	HepG2	liver:	n/a
44	chr1:158322845-158322895	NHDF-neo	bronchial:	n/a
45	chr1:158322845-158322895	LNCaP	prostate:	n/a
46	chr1:158322845-158322895	HCT-116	colon:	n/a
47	chr1:158322845-158322895	SAEC	small airway:	n/a
48	chr1:158322845-158322895	HEK293	kidney:	embryo
49	chr1:158322845-158322895	ProgFib	skin:	n/a
50	chr1:158322841-158322891	HRCEpiC	kidney:	n/a

No data

Variant related genes	Relation type
CD1E	CpG island

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv831692	chr1:158223459-158392016	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv998569	chr1:158317392-158443389	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1010608	chr1:158322815-158353465	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158322600-158324000	Flanking Active TSS	Fetal Thymus	thymus
2	chr1:158322800-158324600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:158322800-158326600	Flanking Active TSS	Dnd41	blood
4	chr1:158322800-158328400	Active TSS	Thymus	Thymus

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