Variant report

Variant	rs57761983
Chromosome Location	chr3:51511182-51511183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:51509396..51511210-chr3:51533332..51534964,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145041	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56753900	0.82[AFR][1000 genomes]
rs56904827	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51458200-51515000	Weak transcription	Fetal Brain Male	brain
2	chr3:51467800-51524000	Weak transcription	Small Intestine	intestine
3	chr3:51477200-51515000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:51490400-51515000	Weak transcription	Stomach Mucosa	stomach
5	chr3:51491400-51532800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:51495000-51532600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:51495400-51513200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:51495800-51518200	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr3:51495800-51518200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr3:51495800-51526800	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr3:51495800-51531800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:51496000-51517800	Strong transcription	Fetal Muscle Trunk	muscle
13	chr3:51496000-51518400	Strong transcription	Fetal Stomach	stomach
14	chr3:51496000-51531800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:51496200-51516600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr3:51496200-51516800	Strong transcription	Dnd41	blood
17	chr3:51496200-51518000	Strong transcription	Placenta	Placenta
18	chr3:51496200-51530600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr3:51496200-51531000	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr3:51496400-51525800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr3:51497200-51524400	Weak transcription	Right Ventricle	heart
22	chr3:51497600-51518200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr3:51498000-51514000	Weak transcription	Brain Substantia Nigra	brain
24	chr3:51498000-51515000	Weak transcription	Esophagus	oesophagus
25	chr3:51499400-51514600	Weak transcription	NHDF-Ad	bronchial
26	chr3:51499400-51532800	Weak transcription	Fetal Heart	heart
27	chr3:51499600-51517800	Strong transcription	Fetal Intestine Small	intestine
28	chr3:51500600-51532800	Weak transcription	Fetal Kidney	kidney
29	chr3:51500800-51514800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr3:51501000-51511800	Weak transcription	Colon Smooth Muscle	Colon
31	chr3:51501000-51514200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr3:51501000-51515000	Weak transcription	A549	lung
33	chr3:51501000-51532400	Weak transcription	Psoas Muscle	Psoas
34	chr3:51501000-51532800	Weak transcription	NH-A	brain
35	chr3:51502200-51512800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr3:51503200-51511200	Strong transcription	Fetal Muscle Leg	muscle
37	chr3:51503400-51512000	Weak transcription	HSMM	muscle
38	chr3:51503400-51514400	Weak transcription	HMEC	breast
39	chr3:51503600-51513200	Weak transcription	Brain Cingulate Gyrus	brain
40	chr3:51503800-51512000	Weak transcription	Brain Hippocampus Middle	brain
41	chr3:51504000-51515400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr3:51504400-51511600	Weak transcription	Ovary	ovary
43	chr3:51504800-51533000	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr3:51505000-51531600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr3:51505000-51533000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr3:51505200-51512000	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr3:51505200-51514800	Weak transcription	Rectal Smooth Muscle	rectum
48	chr3:51506400-51512000	Weak transcription	HepG2	liver
49	chr3:51506400-51513200	Weak transcription	Pancreas	Pancrea
50	chr3:51506400-51514600	Weak transcription	NHLF	lung

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