Variant report

Variant rs577622607
Chromosome Location chr3:50192200-50192201
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:174 , 50 per page) page: 1 2 3 4
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:50187600-50192400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr3:50189600-50193000 Weak transcription Fetal Lung lung
3 chr3:50190000-50193000 Weak transcription Placenta Amnion Placenta Amnion
4 chr3:50191200-50192400 Weak transcription NHEK skin
5 chr3:50191600-50192200 Bivalent Enhancer Primary B cells from peripheral blood blood
6 chr3:50191600-50192200 Bivalent Enhancer Primary T helper cells PMA-I stimulated --
7 chr3:50191600-50192200 Bivalent Enhancer Primary Natural Killer cells fromperipheralblood blood
8 chr3:50191600-50192200 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells G-CSF-mobilized Male --
9 chr3:50191600-50192200 Bivalent Enhancer Fetal Thymus thymus
10 chr3:50191600-50192200 Bivalent Enhancer Stomach Mucosa stomach
11 chr3:50191600-50193200 Bivalent/Poised TSS Primary T cells from cord blood blood
12 chr3:50191600-50193400 Bivalent/Poised TSS iPS-20b Cell Line embryonic stem cell
13 chr3:50191800-50192200 Flanking Active TSS iPS DF 19.11 Cell Line embryonic stem cell
14 chr3:50191800-50192200 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
15 chr3:50191800-50192200 Flanking Bivalent TSS/Enh Primary neutrophils fromperipheralblood blood
16 chr3:50191800-50192200 Flanking Active TSS Primary hematopoietic stem cells blood
17 chr3:50191800-50192200 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
18 chr3:50191800-50192200 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
19 chr3:50191800-50192200 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
20 chr3:50191800-50192200 Flanking Bivalent TSS/Enh Primary T helper cells fromperipheralblood blood
21 chr3:50191800-50192200 Flanking Bivalent TSS/Enh Primary T regulatory cells fromperipheralblood blood
22 chr3:50191800-50192200 Flanking Bivalent TSS/Enh Primary T cells effector/memory enriched fromperipheralblood blood
23 chr3:50191800-50192200 Flanking Bivalent TSS/Enh Foreskin Fibroblast Primary Cells skin02 Skin
24 chr3:50191800-50192200 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr3:50191800-50192200 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr3:50191800-50192200 Flanking Bivalent TSS/Enh Foreskin Melanocyte Primary Cells skin01 Skin
27 chr3:50191800-50192200 Flanking Bivalent TSS/Enh Primary mononuclear cells fromperipheralblood Blood
28 chr3:50191800-50192200 Flanking Bivalent TSS/Enh Brain Germinal Matrix brain
29 chr3:50191800-50192200 Enhancers Brain Substantia Nigra brain
30 chr3:50191800-50192200 Flanking Active TSS Colonic Mucosa Colon
31 chr3:50191800-50192200 Flanking Active TSS Duodenum Mucosa Duodenum
32 chr3:50191800-50192200 Bivalent Enhancer Fetal Intestine Small intestine
33 chr3:50191800-50192200 Bivalent Enhancer Placenta Placenta
34 chr3:50191800-50192200 Flanking Active TSS Pancreas Pancrea
35 chr3:50191800-50192200 Flanking Active TSS Rectal Mucosa Donor 29 rectum
36 chr3:50191800-50192200 Flanking Active TSS Right Ventricle heart
37 chr3:50191800-50192200 Enhancers Sigmoid Colon Sigmoid Colon
38 chr3:50191800-50192200 Flanking Active TSS Skeletal Muscle Male skeletal muscle
39 chr3:50191800-50192200 Flanking Active TSS Skeletal Muscle Female skeletal muscle
40 chr3:50191800-50192200 Flanking Active TSS Stomach Smooth Muscle stomach
41 chr3:50191800-50192200 Flanking Active TSS Spleen Spleen
42 chr3:50191800-50192200 Bivalent Enhancer GM12878-XiMat blood
43 chr3:50191800-50192200 Flanking Active TSS HUVEC blood vessel
44 chr3:50191800-50192200 Flanking Bivalent TSS/Enh Monocytes-CD14+_RO01746 blood
45 chr3:50191800-50192400 Flanking Active TSS Primary B cells from cord blood blood
46 chr3:50191800-50192400 Flanking Bivalent TSS/Enh Foreskin Fibroblast Primary Cells skin01 Skin
47 chr3:50191800-50192600 Enhancers Liver Liver
48 chr3:50191800-50193000 Active TSS Brain Anterior Caudate brain
49 chr3:50191800-50193200 Active TSS Rectal Smooth Muscle rectum
50 chr3:50191800-50193400 Bivalent/Poised TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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