Variant report

Variant	rs577637659
Chromosome Location	chr7:127776602-127776603
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:127770664..127774572-chr7:127774612..127778986,4	K562	blood:
2	chr7:127775242..127776690-chr7:127849539..127850451,13	K562	blood:
3	chr7:127775454..127776695-chr7:127847926..127849197,18	MCF-7	breast:
4	chr7:127775629..127777562-chr7:127847751..127849671,2	MCF-7	breast:
5	chr7:127776325..127778425-chr7:127848466..127850117,2	K562	blood:
6	chr7:127290259..127292033-chr7:127774841..127777045,2	K562	blood:
7	chr7:127774436..127777299-chr7:127779150..127782660,3	K562	blood:
8	chr7:127773375..127775632-chr7:127776520..127778934,2	K562	blood:
9	chr7:127770457..127772622-chr7:127774413..127777391,3	MCF-7	breast:
10	chr7:127775486..127776605-chr7:127849515..127850418,16	MCF-7	breast:
11	chr7:127775768..127776602-chr7:127839565..127840318,2	MCF-7	breast:
12	chr7:127775695..127776672-chr7:127838301..127838940,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000207705	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv3377887	chr7:127776026-127776644	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127774600-127776800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr7:127774800-127776800	Bivalent/Poised TSS	Fetal Brain Female	brain
3	chr7:127775200-127776800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr7:127775200-127776800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr7:127775200-127776800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:127775400-127776800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
7	chr7:127775400-127776800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:127775600-127776800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:127775600-127776800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
10	chr7:127775600-127776800	Active TSS	Brain Angular Gyrus	brain
11	chr7:127775800-127776800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:127775800-127776800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:127775800-127776800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
14	chr7:127775800-127776800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
15	chr7:127775800-127776800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:127775800-127776800	Active TSS	Brain Cingulate Gyrus	brain
17	chr7:127775800-127776800	Bivalent/Poised TSS	Brain Germinal Matrix	brain
18	chr7:127775800-127776800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr7:127775800-127776800	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
20	chr7:127776200-127776800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
21	chr7:127776400-127776800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
22	chr7:127776400-127777400	Bivalent Enhancer	Fetal Thymus	thymus
23	chr7:127776400-127777400	Enhancers	Spleen	Spleen
24	chr7:127776600-127776800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
25	chr7:127776600-127776800	Bivalent Enhancer	Primary B cells from cord blood	blood
26	chr7:127776600-127776800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
27	chr7:127776600-127776800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
28	chr7:127776600-127776800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
29	chr7:127776600-127776800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
30	chr7:127776600-127776800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
31	chr7:127776600-127776800	Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr7:127776600-127776800	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
33	chr7:127776600-127776800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr7:127776600-127776800	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
35	chr7:127776600-127776800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr7:127776600-127776800	Bivalent Enhancer	Adipose Nuclei	Adipose
37	chr7:127776600-127776800	Bivalent Enhancer	Liver	Liver
38	chr7:127776600-127776800	Active TSS	Brain Anterior Caudate	brain
39	chr7:127776600-127776800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
40	chr7:127776600-127776800	Bivalent Enhancer	Fetal Stomach	stomach
41	chr7:127776600-127776800	Bivalent/Poised TSS	HUVEC	blood vessel
42	chr7:127776600-127777000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
43	chr7:127776600-127777200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr7:127776600-127777200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr7:127776600-127777200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
46	chr7:127776600-127777400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
47	chr7:127776600-127777400	Enhancers	Pancreas	Pancrea
48	chr7:127776600-127777600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr7:127776600-127777600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
50	chr7:127776600-127777600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin

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