Variant report

Variant	rs577639088
Chromosome Location	chr10:21845482-21845483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:21812998..21814709-chr10:21843964..21846708,2	K562	blood:
2	chr10:21823293..21824850-chr10:21844513..21847043,2	MCF-7	breast:
3	chr10:21828206..21830933-chr10:21844979..21847249,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180592	Chromatin interaction
ENSG00000078403	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825284	chr10:21739527-21847437	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
2	nsv825285	chr10:21742026-21874334	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv825289	chr10:21762506-21845875	Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
4	nsv1052477	chr10:21810270-21889726	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv1036585	chr10:21833717-21998042	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv947765	chr10:21845377-21874408	Genic enhancers Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21824600-21864600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:21824600-21930400	Weak transcription	Gastric	stomach
3	chr10:21824800-21852200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:21824800-21852200	Strong transcription	Fetal Intestine Small	intestine
5	chr10:21824800-21860200	Weak transcription	Psoas Muscle	Psoas
6	chr10:21825000-21850000	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr10:21825200-21850600	Strong transcription	Fetal Stomach	stomach
8	chr10:21825200-21854800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:21825600-21849800	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr10:21825600-21850000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:21825600-21857800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr10:21825800-21856200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:21826200-21850600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:21827800-21850800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:21828000-21851200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr10:21828000-21856600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:21832000-21856400	Weak transcription	Colonic Mucosa	Colon
18	chr10:21832000-21876400	Weak transcription	Aorta	Aorta
19	chr10:21832200-21848000	Weak transcription	Esophagus	oesophagus
20	chr10:21832800-21856200	Weak transcription	Pancreas	Pancrea
21	chr10:21833400-21851200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr10:21833400-21856200	Weak transcription	Small Intestine	intestine
23	chr10:21833400-21856400	Weak transcription	Colon Smooth Muscle	Colon
24	chr10:21833600-21848000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:21834400-21847800	Weak transcription	Brain Angular Gyrus	brain
26	chr10:21835200-21848000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:21835600-21850000	Strong transcription	Dnd41	blood
28	chr10:21835800-21850000	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr10:21836600-21850000	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr10:21837200-21847000	Strong transcription	Primary T cells from cord blood	blood
31	chr10:21837200-21849600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr10:21837600-21846800	Strong transcription	Adipose Nuclei	Adipose
33	chr10:21837600-21849800	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr10:21837600-21850000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr10:21837600-21850400	Strong transcription	Fetal Muscle Leg	muscle
36	chr10:21837800-21846800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr10:21837800-21849800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr10:21837800-21849800	Strong transcription	Fetal Thymus	thymus
39	chr10:21838000-21847000	Strong transcription	Fetal Muscle Trunk	muscle
40	chr10:21838000-21848400	Strong transcription	Fetal Intestine Large	intestine
41	chr10:21838000-21849800	Strong transcription	H1 Cell Line	embryonic stem cell
42	chr10:21838000-21850000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr10:21838200-21851400	Strong transcription	Placenta	Placenta
44	chr10:21838400-21848400	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr10:21838800-21845800	Strong transcription	Stomach Smooth Muscle	stomach
46	chr10:21839000-21864200	Weak transcription	Fetal Heart	heart
47	chr10:21839200-21859000	Weak transcription	Right Atrium	heart
48	chr10:21839400-21848200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr10:21839400-21850000	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr10:21839400-21851200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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