Variant report

Variant	rs577640939
Chromosome Location	chr4:103241228-103241229
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:103239128..103241511-chr4:103244052..103246907,2	MCF-7	breast:
2	chr4:103239311..103241337-chr4:103423190..103425139,2	MCF-7	breast:
3	chr4:103239724..103242583-chr4:103255498..103257630,2	K562	blood:

Variant related genes	Relation type
ENSG00000109320	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3372511	chr4:103240354-103243302	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3340061	chr4:103240579-103243002	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3390612	chr4:103240979-103242477	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103182000-103255400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr4:103196200-103242400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr4:103210400-103256800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr4:103214800-103243200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:103218000-103242800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:103218600-103245800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr4:103219200-103242600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr4:103221400-103242600	Weak transcription	K562	blood
9	chr4:103224000-103263600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr4:103228000-103242400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:103228200-103242800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr4:103228600-103242600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr4:103230000-103242800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:103230000-103245800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr4:103232600-103242400	Weak transcription	Dnd41	blood
16	chr4:103232600-103249400	Weak transcription	Hela-S3	cervix
17	chr4:103234800-103242600	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr4:103236000-103242800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr4:103236200-103242600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr4:103237400-103264000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:103238800-103242800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr4:103239000-103242800	Weak transcription	Primary B cells from cord blood	blood
23	chr4:103239000-103256800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr4:103240400-103242400	Weak transcription	Primary T cells from cord blood	blood
25	chr4:103240400-103242400	Weak transcription	GM12878-XiMat	blood
26	chr4:103240600-103242600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr4:103240600-103244000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr4:103240800-103242800	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr4:103240800-103244600	Weak transcription	Placenta	Placenta
30	chr4:103241000-103242000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr4:103241000-103242000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr4:103241000-103242000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr4:103241000-103242400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr4:103241000-103242400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr4:103241000-103242400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr4:103241000-103242400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr4:103241000-103242600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr4:103241000-103244000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr4:103241000-103246400	Weak transcription	Fetal Lung	lung
40	chr4:103241200-103241400	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr4:103241200-103242000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr4:103241200-103242200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr4:103241200-103242200	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr4:103241200-103242400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr4:103241200-103242400	Weak transcription	Lung	lung
46	chr4:103241200-103246400	Weak transcription	Fetal Kidney	kidney
47	chr4:103241200-103263600	Weak transcription	Liver	Liver
48	chr4:103241200-103263600	Weak transcription	Rectal Mucosa Donor 31	rectum

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