Variant report

Variant	rs577642900
Chromosome Location	chr10:91295121-91295122
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv932413	chr10:91294861-91300246	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91293200-91296000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr10:91293800-91295400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
3	chr10:91293800-91295800	Active TSS	H9 Cell Line	embryonic stem cell
4	chr10:91293800-91295800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chr10:91293800-91296000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:91293800-91296200	Active TSS	Pancreas	Pancrea
7	chr10:91294000-91296000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
8	chr10:91294000-91296000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr10:91294000-91296000	Weak transcription	Fetal Heart	heart
10	chr10:91294000-91296000	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr10:91294000-91296200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:91294200-91295200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:91294200-91295200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:91294200-91295800	Active TSS	Left Ventricle	heart
15	chr10:91294200-91295800	Bivalent/Poised TSS	Psoas Muscle	Psoas
16	chr10:91294200-91295800	Active TSS	Right Ventricle	heart
17	chr10:91294400-91295200	Active TSS	Fetal Kidney	kidney
18	chr10:91294400-91295400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
19	chr10:91294400-91295400	Flanking Bivalent TSS/Enh	Placenta	Placenta
20	chr10:91294400-91295800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
21	chr10:91294400-91295800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
22	chr10:91294400-91295800	Bivalent/Poised TSS	A549	lung
23	chr10:91294400-91295800	Bivalent/Poised TSS	NH-A	brain
24	chr10:91294600-91295200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
25	chr10:91294600-91295200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
26	chr10:91294600-91295200	Bivalent Enhancer	Brain Angular Gyrus	brain
27	chr10:91294600-91295200	Bivalent Enhancer	Fetal Brain Male	brain
28	chr10:91294600-91295600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
29	chr10:91294600-91295800	Bivalent Enhancer	Fetal Thymus	thymus
30	chr10:91294600-91296000	Bivalent/Poised TSS	Fetal Brain Female	brain
31	chr10:91294600-91296000	Active TSS	Right Atrium	heart
32	chr10:91294800-91295200	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:91294800-91295200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr10:91294800-91295200	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
35	chr10:91294800-91295200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
36	chr10:91294800-91295200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
37	chr10:91294800-91295200	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
38	chr10:91294800-91295200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
39	chr10:91294800-91295200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
40	chr10:91294800-91295200	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
41	chr10:91294800-91295200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
42	chr10:91294800-91295200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
43	chr10:91294800-91295200	Flanking Bivalent TSS/Enh	NHLF	lung
44	chr10:91294800-91295400	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:91294800-91295400	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
46	chr10:91294800-91295400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
47	chr10:91294800-91295400	Flanking Bivalent TSS/Enh	HMEC	breast
48	chr10:91294800-91295600	Bivalent Enhancer	Primary B cells from cord blood	blood
49	chr10:91294800-91295600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
50	chr10:91294800-91295800	Bivalent Enhancer	Primary B cells from peripheral blood	blood

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