Variant report

Variant	rs577643107
Chromosome Location	chr18:45456097-45456098
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:45422809..45427886-chr18:45455832..45459212,8	MCF-7	breast:
2	chr18:45445551..45451271-chr18:45453158..45456977,7	K562	blood:
3	chr18:45412211..45417305-chr18:45454331..45458060,5	MCF-7	breast:
4	chr18:45419311..45422107-chr18:45455091..45458226,3	K562	blood:
5	chr18:45456073..45456590-chr7:135346757..135347525,2	Hela-S3	cervix:
6	chr18:45455170..45457899-chr18:45935970..45938603,2	K562	blood:

Variant related genes	Relation type
ENSG00000184828	Chromatin interaction
ENSG00000175387	Chromatin interaction
ENSG00000243317	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909614	chr18:45419421-45478490	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv909615	chr18:45452321-45493026	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv3446751	chr18:45455904-45459152	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45439000-45456200	Weak transcription	Esophagus	oesophagus
2	chr18:45439000-45456200	Weak transcription	Spleen	Spleen
3	chr18:45439800-45456200	Weak transcription	Pancreas	Pancrea
4	chr18:45450000-45456200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr18:45453600-45458200	Active TSS	GM12878-XiMat	blood
6	chr18:45453800-45456200	Weak transcription	Gastric	stomach
7	chr18:45454400-45456200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr18:45454400-45456400	Flanking Active TSS	Primary T cells from cord blood	blood
9	chr18:45454400-45456400	Flanking Active TSS	Dnd41	blood
10	chr18:45454600-45456200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr18:45454600-45456200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr18:45454600-45456400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr18:45454600-45456400	Flanking Active TSS	HUVEC	blood vessel
14	chr18:45454600-45458000	Active TSS	Ovary	ovary
15	chr18:45454600-45458200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr18:45454600-45458400	Active TSS	H1 Cell Line	embryonic stem cell
17	chr18:45454600-45458400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr18:45454600-45458600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr18:45454600-45458600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr18:45454800-45456200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
21	chr18:45454800-45456400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
22	chr18:45454800-45456400	Flanking Active TSS	Adipose Nuclei	Adipose
23	chr18:45454800-45456400	Flanking Active TSS	Fetal Lung	lung
24	chr18:45454800-45456400	Active TSS	Right Atrium	heart
25	chr18:45454800-45456400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr18:45454800-45457800	Active TSS	Hela-S3	cervix
27	chr18:45454800-45458000	Active TSS	HMEC	breast
28	chr18:45454800-45458200	Active TSS	H9 Cell Line	embryonic stem cell
29	chr18:45454800-45458200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr18:45454800-45458200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr18:45454800-45458200	Active TSS	Stomach Smooth Muscle	stomach
32	chr18:45454800-45458400	Active TSS	NHLF	lung
33	chr18:45454800-45458600	Active TSS	K562	blood
34	chr18:45455000-45456200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
35	chr18:45455000-45456400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr18:45455000-45456400	Flanking Active TSS	NH-A	brain
37	chr18:45455000-45457800	Active TSS	Primary T cells fromperipheralblood	blood
38	chr18:45455000-45458000	Active TSS	A549	lung
39	chr18:45455000-45458200	Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr18:45455000-45458200	Active TSS	iPS-20b Cell Line	embryonic stem cell
41	chr18:45455000-45458200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr18:45455000-45458200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr18:45455000-45458200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr18:45455000-45458400	Active TSS	iPS-15b Cell Line	embryonic stem cell
45	chr18:45455000-45458600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr18:45455000-45458600	Active TSS	Breast Myoepithelial Primary Cells	Breast
47	chr18:45455200-45456400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
48	chr18:45455200-45457800	Active TSS	Fetal Thymus	thymus
49	chr18:45455200-45457800	Active TSS	Rectal Mucosa Donor 29	rectum
50	chr18:45455200-45457800	Active TSS	Thymus	Thymus

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