Variant report

Variant	rs577644975
Chromosome Location	chr14:67635086-67635087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:67634777..67636512-chr14:67650337..67652354,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902058	chr14:67310195-67760538	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv902059	chr14:67352226-67760538	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv2751285	chr14:67364747-67886781	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv902060	chr14:67417083-67760538	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1045518	chr14:67529049-67959582	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv832821	chr14:67590418-67828169	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv1040257	chr14:67634585-67762806	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67584200-67637400	Weak transcription	Pancreas	Pancrea
2	chr14:67588000-67639400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr14:67588400-67639200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:67588600-67638400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr14:67590200-67637400	Weak transcription	Aorta	Aorta
6	chr14:67590200-67638000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:67590800-67637600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:67591400-67640000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr14:67600800-67647400	Weak transcription	Fetal Kidney	kidney
10	chr14:67610800-67638400	Weak transcription	Left Ventricle	heart
11	chr14:67613000-67640200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr14:67613200-67637400	Weak transcription	Adipose Nuclei	Adipose
13	chr14:67614400-67653200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr14:67618400-67639200	Weak transcription	Brain Hippocampus Middle	brain
15	chr14:67618400-67658200	Weak transcription	Brain Angular Gyrus	brain
16	chr14:67625400-67638800	Weak transcription	GM12878-XiMat	blood
17	chr14:67626000-67638600	Weak transcription	Esophagus	oesophagus
18	chr14:67626400-67639800	Weak transcription	Primary T cells from cord blood	blood
19	chr14:67627000-67637400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr14:67627000-67638400	Weak transcription	Fetal Stomach	stomach
21	chr14:67629800-67637400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr14:67630000-67645600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr14:67630400-67637200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr14:67631600-67637600	Weak transcription	Fetal Intestine Small	intestine
25	chr14:67631600-67645800	Weak transcription	Psoas Muscle	Psoas
26	chr14:67631800-67638600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr14:67632400-67640000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr14:67632600-67638800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr14:67632800-67636000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:67633200-67637200	Weak transcription	Right Ventricle	heart
31	chr14:67633200-67640000	Weak transcription	Brain Anterior Caudate	brain
32	chr14:67633200-67640000	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr14:67633200-67645400	Weak transcription	Rectal Smooth Muscle	rectum
34	chr14:67633400-67637400	Weak transcription	Gastric	stomach
35	chr14:67633400-67639800	Weak transcription	Dnd41	blood
36	chr14:67633600-67636000	Enhancers	A549	lung
37	chr14:67633600-67637200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr14:67633600-67637200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr14:67633600-67637600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr14:67633600-67640000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr14:67633600-67640200	Weak transcription	Colon Smooth Muscle	Colon
42	chr14:67633800-67638200	Weak transcription	Fetal Muscle Leg	muscle
43	chr14:67634200-67635200	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr14:67634200-67635200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr14:67634200-67635200	Enhancers	Muscle Satellite Cultured Cells	--
46	chr14:67634200-67635600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr14:67634200-67635600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr14:67634200-67635600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr14:67634200-67635600	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr14:67634200-67635600	Enhancers	HSMM	muscle

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