Variant report

Variant	rs57766030
Chromosome Location	chr3:112886416-112886417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11717082	1.00[EUR][1000 genomes]
rs11916824	1.00[EUR][1000 genomes]
rs13315100	1.00[EUR][1000 genomes]
rs13316462	1.00[EUR][1000 genomes]
rs1381062	1.00[EUR][1000 genomes]
rs1563932	1.00[EUR][1000 genomes]
rs1797613	1.00[EUR][1000 genomes]
rs1797618	1.00[EUR][1000 genomes]
rs2045689	1.00[EUR][1000 genomes]
rs2613918	1.00[EUR][1000 genomes]
rs2613924	1.00[EUR][1000 genomes]
rs2613930	1.00[EUR][1000 genomes]
rs2613953	1.00[EUR][1000 genomes]
rs2613955	1.00[EUR][1000 genomes]
rs2613965	1.00[EUR][1000 genomes]
rs2613966	1.00[EUR][1000 genomes]
rs2613969	1.00[EUR][1000 genomes]
rs2650095	1.00[EUR][1000 genomes]
rs2700195	1.00[EUR][1000 genomes]
rs2700197	1.00[EUR][1000 genomes]
rs2700211	1.00[EUR][1000 genomes]
rs2700213	1.00[EUR][1000 genomes]
rs2700228	1.00[EUR][1000 genomes]
rs2926810	1.00[EUR][1000 genomes]
rs2951457	1.00[EUR][1000 genomes]
rs57228683	1.00[EUR][1000 genomes]
rs57995695	1.00[EUR][1000 genomes]
rs58100446	1.00[EUR][1000 genomes]
rs58310808	1.00[EUR][1000 genomes]
rs59069330	1.00[EUR][1000 genomes]
rs59171219	1.00[EUR][1000 genomes]
rs59534035	1.00[EUR][1000 genomes]
rs59923952	1.00[EUR][1000 genomes]
rs6798990	1.00[EUR][1000 genomes]
rs712528	1.00[EUR][1000 genomes]
rs7615891	1.00[EUR][1000 genomes]
rs7623507	1.00[EUR][1000 genomes]
rs7629976	1.00[EUR][1000 genomes]
rs799828	1.00[EUR][1000 genomes]
rs9826018	1.00[EUR][1000 genomes]
rs9864636	1.00[EUR][1000 genomes]
rs9873004	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv829677	chr3:112857075-113038987	Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1003511	chr3:112858775-112989045	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv517636	chr3:112878536-112893640	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112883800-112886600	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr3:112883800-112886600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:112883800-112887800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:112883800-112889400	Enhancers	Fetal Muscle Leg	muscle
5	chr3:112884000-112886600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr3:112884000-112887000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:112884000-112887400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:112884000-112889200	Enhancers	Fetal Stomach	stomach
9	chr3:112884000-112889600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:112884000-112889600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr3:112884200-112887200	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr3:112884200-112888800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:112884400-112887800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr3:112884400-112889400	Enhancers	Fetal Lung	lung
15	chr3:112884800-112886600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr3:112884800-112886800	Enhancers	Adipose Nuclei	Adipose
17	chr3:112884800-112888000	Enhancers	Fetal Intestine Large	intestine
18	chr3:112885000-112887600	Enhancers	Fetal Intestine Small	intestine
19	chr3:112885000-112889200	Enhancers	Fetal Kidney	kidney
20	chr3:112885200-112886600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:112885200-112886600	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr3:112885200-112886600	Enhancers	Fetal Heart	heart
23	chr3:112885200-112887000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr3:112885200-112889000	Enhancers	Placenta Amnion	Placenta Amnion
25	chr3:112885400-112886600	Enhancers	Fetal Brain Male	brain
26	chr3:112885400-112888000	Weak transcription	Fetal Thymus	thymus
27	chr3:112885400-112889000	Enhancers	Brain Germinal Matrix	brain
28	chr3:112885400-112889000	Enhancers	Fetal Muscle Trunk	muscle
29	chr3:112885600-112886600	Flanking Active TSS	Stomach Smooth Muscle	stomach
30	chr3:112885600-112886800	Enhancers	Brain Anterior Caudate	brain
31	chr3:112885600-112886800	Enhancers	Stomach Mucosa	stomach
32	chr3:112886000-112886600	Flanking Active TSS	HSMMtube	muscle
33	chr3:112886000-112888000	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr3:112886200-112886600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr3:112886200-112888800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr3:112886200-112888800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr3:112886200-112888800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr3:112886400-112886800	Weak transcription	Brain Substantia Nigra	brain
39	chr3:112886400-112886800	Enhancers	NHDF-Ad	bronchial
40	chr3:112886400-112887000	Weak transcription	Fetal Brain Female	brain
41	chr3:112886400-112887000	Weak transcription	Right Atrium	heart
42	chr3:112886400-112887000	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr3:112886400-112887200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr3:112886400-112887200	Enhancers	Colon Smooth Muscle	Colon
45	chr3:112886400-112887200	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr3:112886400-112887400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr3:112886400-112887400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr3:112886400-112887400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr3:112886400-112887400	Weak transcription	Aorta	Aorta
50	chr3:112886400-112887800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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