Variant report

Variant	rs5776727
Chromosome Location	chr1:104896264-104896265
allele	-/AG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872072	chr1:104470622-105076810	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1010903	chr1:104483363-105468941	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2762170	chr1:104817700-105411596	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv872074	chr1:104844174-104922505	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
5	nsv872075	chr1:104871518-104922505	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
6	nsv872076	chr1:104871518-104952299	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv462827	chr1:104882281-104897848	Enhancers	n/a	n/a	inside rSNPs	diseases
8	nsv547210	chr1:104882281-104897848	Enhancers	n/a	n/a	inside rSNPs	diseases
9	nsv947542	chr1:104887345-104899104	Enhancers	n/a	n/a	inside rSNPs	diseases
10	nsv462840	chr1:104890086-104911326	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	nsv547211	chr1:104890086-104911326	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	nsv547212	chr1:104890086-104946284	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
13	nsv872077	chr1:104890559-104952299	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
14	nsv547213	chr1:104890559-104954365	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
15	nsv872078	chr1:104890559-104997471	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
16	nsv547214	chr1:104893852-104946284	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
17	nsv872079	chr1:104893852-104980964	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
18	nsv872080	chr1:104893852-104985647	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
19	esv1990633	chr1:104896264-104896266	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:104896000-104896400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:104896200-104896600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links