The 2.0 version of rSNPBase

Variant report

Variant rs577686198
Chromosome Location chr10:18454293-18454294
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:18431400-18468800 Weak transcription Brain Cingulate Gyrus brain
2 chr10:18435000-18467200 Weak transcription Brain Hippocampus Middle brain
3 chr10:18443800-18459000 Weak transcription Fetal Intestine Small intestine
4 chr10:18444600-18456000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
5 chr10:18444600-18457000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
6 chr10:18444600-18458400 Weak transcription Primary hematopoietic stem cells blood
7 chr10:18444600-18466800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
8 chr10:18448400-18469000 Weak transcription Right Ventricle heart
9 chr10:18452400-18454600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
10 chr10:18452400-18454600 Enhancers Ovary ovary
11 chr10:18452400-18456000 Weak transcription Cortex derived primary cultured neurospheres brain
12 chr10:18452600-18454600 Enhancers Fetal Lung lung
13 chr10:18452600-18454600 Enhancers Fetal Stomach stomach
14 chr10:18452800-18454600 Enhancers Osteobl bone
15 chr10:18452800-18466600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr10:18453000-18459600 Weak transcription Pancreatic Islets Pancreatic Islet
17 chr10:18453200-18454600 Enhancers Muscle Satellite Cultured Cells --
18 chr10:18453200-18454600 Enhancers Fetal Muscle Leg muscle
19 chr10:18453400-18458600 Weak transcription Fetal Adrenal Gland Adrenal Gland
20 chr10:18453600-18454400 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr10:18453600-18454400 Enhancers Fetal Brain Male brain
22 chr10:18453800-18454600 Enhancers Fetal Brain Female brain
23 chr10:18453800-18454800 Enhancers NHDF-Ad bronchial
24 chr10:18453800-18465000 Weak transcription Fetal Heart heart
25 chr10:18454000-18454400 Flanking Active TSS Rectal Smooth Muscle rectum
26 chr10:18454000-18454400 Flanking Active TSS NHLF lung
27 chr10:18454000-18454600 Enhancers Left Ventricle heart
28 chr10:18454000-18454600 Enhancers Sigmoid Colon Sigmoid Colon
29 chr10:18454000-18454600 Flanking Active TSS NH-A brain
30 chr10:18454200-18454400 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
31 chr10:18454200-18454400 Genic enhancers Aorta Aorta
32 chr10:18454200-18454400 Active TSS Brain Dorsolateral Prefrontal Cortex brain
33 chr10:18454200-18454400 Flanking Active TSS Stomach Smooth Muscle stomach
34 chr10:18454200-18454600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
35 chr10:18454200-18454600 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr10:18454200-18454600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr10:18454200-18454600 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
38 chr10:18454200-18454600 Enhancers Colon Smooth Muscle Colon
39 chr10:18454200-18454600 Enhancers Lung lung
40 chr10:18454200-18454600 Genic enhancers Pancreas Pancrea
41 chr10:18454200-18454600 Enhancers Skeletal Muscle Female skeletal muscle
42 chr10:18454200-18454600 Enhancers HSMM muscle
43 chr10:18454200-18454800 Strong transcription Brain Anterior Caudate brain

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Last update: Aug 31, 2015