Variant report

Variant	rs57768657
Chromosome Location	chr2:234494133-234494134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	2:234492023-234494396..2:234743181-234749667	Hela-S3	cervix:
2	2:234492023-234494396..2:234543708-234558325	GM12878	blood:
3	2:234492023-234494396..2:234954947-234965240	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000123485	Chromatin interaction
ENSG00000242515	Chromatin interaction
ENSG00000072080	Chromatin interaction
ENSG00000234143	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs28968502	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28968503	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28968505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4047262	0.88[AFR][1000 genomes]
rs4281901	0.88[AFR][1000 genomes]
rs55888324	0.88[AFR][1000 genomes]
rs56274731	0.80[AFR][1000 genomes]
rs57285092	0.84[AFR][1000 genomes]
rs58330864	0.84[AFR][1000 genomes]
rs58583213	0.88[AFR][1000 genomes]
rs59954119	0.88[AFR][1000 genomes]
rs6734355	0.84[AFR][1000 genomes]
rs73996105	0.84[AFR][1000 genomes]
rs73996107	0.88[AFR][1000 genomes]
rs73996118	0.88[AFR][1000 genomes]
rs73996119	0.88[AFR][1000 genomes]
rs73996120	0.88[AFR][1000 genomes]
rs73996121	0.88[AFR][1000 genomes]
rs73996124	0.88[AFR][1000 genomes]
rs73996138	0.88[AFR][1000 genomes]
rs73997630	0.84[AFR][1000 genomes]
rs73997631	0.84[AFR][1000 genomes]
rs73997633	0.84[AFR][1000 genomes]
rs73997637	0.84[AFR][1000 genomes]
rs73997638	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529419	chr2:234229606-234670426	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv876013	chr2:234338227-234579915	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv428072	chr2:234393609-234624769	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	esv11149	chr2:234492605-234501401	Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
5	esv1801264	chr2:234492805-234500262	Enhancers Active TSS Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
6	esv1802734	chr2:234492805-234500262	Enhancers Bivalent Enhancer Active TSS Weak transcription	TF binding region Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
7	nsv522661	chr2:234493048-234496945	Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
8	nsv961571	chr2:234494111-234495500	Enhancers Weak transcription	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234486400-234494800	Weak transcription	A549	lung
2	chr2:234493000-234494200	Enhancers	Spleen	Spleen

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