Variant report

Variant	rs577714771
Chromosome Location	chr6:167039900-167039901
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:167027136..167029744-chr6:167037956..167040696,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv432984	chr6:167018915-167181613	Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1023649	chr6:167026469-167060732	Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3411974	chr6:167039387-167042335	Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167037800-167040000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:167038200-167041800	Active TSS	Right Ventricle	heart
3	chr6:167038400-167042200	Active TSS	Psoas Muscle	Psoas
4	chr6:167038600-167040000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:167038600-167041800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:167038600-167042000	Active TSS	Lung	lung
7	chr6:167038800-167040000	Flanking Active TSS	Osteobl	bone
8	chr6:167039000-167041200	Active TSS	Right Atrium	heart
9	chr6:167039000-167041800	Active TSS	Left Ventricle	heart
10	chr6:167039200-167040000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:167039200-167040000	Flanking Active TSS	NH-A	brain
12	chr6:167039200-167040200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:167039200-167040400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr6:167039200-167040600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
15	chr6:167039200-167041600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:167039200-167041800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:167039200-167041800	Active TSS	Muscle Satellite Cultured Cells	--
18	chr6:167039200-167041800	Active TSS	Brain Inferior Temporal Lobe	brain
19	chr6:167039200-167041800	Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr6:167039200-167041800	Active TSS	HSMMtube	muscle
21	chr6:167039400-167040000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
22	chr6:167039400-167040000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:167039400-167040000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
24	chr6:167039400-167040000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:167039400-167040000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:167039400-167040000	Flanking Active TSS	Brain Anterior Caudate	brain
27	chr6:167039400-167040000	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
28	chr6:167039400-167040000	Flanking Active TSS	Fetal Heart	heart
29	chr6:167039400-167040200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
30	chr6:167039400-167040200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
31	chr6:167039400-167040200	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
32	chr6:167039400-167040400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
33	chr6:167039400-167040400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
34	chr6:167039400-167040400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:167039400-167040400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
36	chr6:167039400-167040600	Flanking Active TSS	Primary B cells from cord blood	blood
37	chr6:167039400-167040600	Flanking Active TSS	Adipose Nuclei	Adipose
38	chr6:167039400-167040600	Flanking Active TSS	Stomach Smooth Muscle	stomach
39	chr6:167039400-167040600	Flanking Bivalent TSS/Enh	Thymus	Thymus
40	chr6:167039400-167041600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:167039400-167041600	Active TSS	HSMM	muscle
42	chr6:167039400-167041800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:167039400-167041800	Active TSS	Brain Cingulate Gyrus	brain
44	chr6:167039400-167041800	Active TSS	Colonic Mucosa	Colon
45	chr6:167039400-167041800	Active TSS	Fetal Brain Female	brain
46	chr6:167039400-167041800	Active TSS	NHDF-Ad	bronchial
47	chr6:167039400-167042000	Active TSS	Pancreas	Pancrea
48	chr6:167039400-167042200	Active TSS	Pancreatic Islets	Pancreatic Islet
49	chr6:167039400-167042400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:167039600-167040000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell

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