Variant report

Variant	rs577722
Chromosome Location	chr19:40671690-40671691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs339521	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs593990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62107628	0.89[AMR][1000 genomes]
rs62108930	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917321	chr19:40403192-40694875	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1826663	chr19:40529943-41023601	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	nsv911697	chr19:40599603-40711333	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv2758499	chr19:40612420-40839520	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	esv2758761	chr19:40612420-40839520	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv528831	chr19:40665924-40684919	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40654200-40673400	Weak transcription	Right Atrium	heart
2	chr19:40667400-40671800	Enhancers	Primary B cells from cord blood	blood
3	chr19:40667400-40671800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr19:40667600-40671800	Enhancers	Primary B cells from peripheral blood	blood
5	chr19:40668000-40676800	Weak transcription	HepG2	liver
6	chr19:40668400-40671800	Enhancers	GM12878-XiMat	blood
7	chr19:40671000-40671800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr19:40671200-40671800	Enhancers	Primary T cells fromperipheralblood	blood
9	chr19:40671200-40671800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr19:40671200-40671800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr19:40671600-40671800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr19:40671600-40671800	Enhancers	Fetal Brain Male	brain
13	chr19:40671600-40688800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr19:40671600-40689000	Weak transcription	Brain Inferior Temporal Lobe	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links