Variant report

Variant	rs577751954
Chromosome Location	chr9:71862647-71862648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051723	chr9:71398713-71971285	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv931684	chr9:71417110-71957723	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1049175	chr9:71418242-71986910	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1035823	chr9:71465139-71901672	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv466396	chr9:71471912-71935577	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv614548	chr9:71471912-71935577	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv1035477	chr9:71511927-71959487	Enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	nsv893416	chr9:71597840-71888601	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
9	nsv817406	chr9:71675454-72179318	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv831610	chr9:71846941-72016835	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
11	esv1796249	chr9:71862129-71911566	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71828000-71866000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr9:71828600-71865600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:71828800-71874200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr9:71831400-71868000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr9:71831400-71872800	Strong transcription	Liver	Liver
6	chr9:71831600-71863200	Weak transcription	Hela-S3	cervix
7	chr9:71836400-71874000	Weak transcription	Fetal Brain Male	brain
8	chr9:71837400-71863000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:71839000-71872600	Strong transcription	Fetal Intestine Large	intestine
10	chr9:71839600-71863400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr9:71840200-71870400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:71841400-71869800	Weak transcription	Colon Smooth Muscle	Colon
13	chr9:71841400-71869800	Weak transcription	K562	blood
14	chr9:71843400-71868000	Weak transcription	Dnd41	blood
15	chr9:71845200-71872000	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr9:71847000-71868800	Weak transcription	Small Intestine	intestine
17	chr9:71847600-71871200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr9:71847600-71879600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr9:71847800-71867800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr9:71851800-71870800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr9:71852000-71876800	Weak transcription	Psoas Muscle	Psoas
22	chr9:71852400-71864200	Weak transcription	Stomach Mucosa	stomach
23	chr9:71853600-71863200	Weak transcription	Brain Anterior Caudate	brain
24	chr9:71853600-71868800	Weak transcription	HSMMtube	muscle
25	chr9:71853800-71870800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr9:71854000-71865800	Weak transcription	NH-A	brain
27	chr9:71855200-71863000	Weak transcription	Osteobl	bone
28	chr9:71855400-71864600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr9:71855600-71865600	Weak transcription	HSMM	muscle
30	chr9:71855800-71863600	Weak transcription	NHDF-Ad	bronchial
31	chr9:71855800-71865800	Weak transcription	Fetal Muscle Trunk	muscle
32	chr9:71855800-71867200	Weak transcription	Spleen	Spleen
33	chr9:71857200-71869400	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr9:71858600-71870000	Strong transcription	HepG2	liver
35	chr9:71859000-71865000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr9:71859000-71870200	Strong transcription	Duodenum Mucosa	Duodenum
37	chr9:71859200-71870400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr9:71859200-71872200	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr9:71859200-71872600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr9:71859400-71867800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr9:71859400-71873000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr9:71859600-71872200	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr9:71860000-71864000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr9:71860000-71870600	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr9:71860200-71867200	Strong transcription	Adipose Nuclei	Adipose
46	chr9:71860400-71864600	Strong transcription	Primary hematopoietic stem cells	blood
47	chr9:71860400-71864600	Strong transcription	GM12878-XiMat	blood
48	chr9:71860400-71869600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr9:71860400-71870000	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr9:71860400-71870200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links