Variant report

Variant	rs577759585
Chromosome Location	chr3:99243305-99243306
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2572173	chr3:99242379-99245339	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
5	esv2354307	chr3:99243106-99245058	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
6	esv3462201	chr3:99243125-99244981	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
7	esv3462199	chr3:99243177-99244955	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
8	esv3462203	chr3:99243190-99244924	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
9	esv3462202	chr3:99243196-99244903	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
10	esv13001	chr3:99243238-99244869	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
11	esv3462200	chr3:99243249-99244875	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
12	esv3462204	chr3:99243263-99244871	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99241800-99245800	Weak transcription	Fetal Heart	heart
2	chr3:99242000-99243400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:99242200-99243400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:99242400-99243400	Enhancers	NHDF-Ad	bronchial
5	chr3:99242600-99246000	Weak transcription	HSMMtube	muscle
6	chr3:99242600-99254000	Weak transcription	HUVEC	blood vessel
7	chr3:99243000-99243400	Enhancers	Aorta	Aorta
8	chr3:99243200-99243400	Enhancers	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links