Variant report

Variant	rs577761172
Chromosome Location	chr21:15588633-15588634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058202	chr21:14706767-15628668	Weak transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	nsv869466	chr21:15482572-15683385	Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv913402	chr21:15545350-15606128	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1056588	chr21:15583231-15615520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1066738	chr21:15587815-15642948	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15587800-15588800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr21:15587800-15589600	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr21:15588000-15588800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr21:15588000-15588800	Active TSS	Primary B cells from cord blood	blood
5	chr21:15588000-15588800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr21:15588000-15588800	Active TSS	Fetal Brain Female	brain
7	chr21:15588000-15588800	Active TSS	Thymus	Thymus
8	chr21:15588000-15589000	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr21:15588000-15589000	Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr21:15588000-15589000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr21:15588000-15589000	Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr21:15588000-15589000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr21:15588000-15589000	Active TSS	Ovary	ovary
14	chr21:15588000-15589200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr21:15588000-15589200	Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr21:15588000-15589200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr21:15588000-15589200	Bivalent/Poised TSS	A549	lung
18	chr21:15588000-15589400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
19	chr21:15588000-15589400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr21:15588000-15589400	Active TSS	Brain Angular Gyrus	brain
21	chr21:15588000-15589400	Active TSS	Brain Anterior Caudate	brain
22	chr21:15588000-15589600	Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr21:15588000-15589600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
24	chr21:15588000-15589600	Active TSS	Brain Cingulate Gyrus	brain
25	chr21:15588000-15589600	Active TSS	Brain Hippocampus Middle	brain
26	chr21:15588000-15589600	Active TSS	Brain Inferior Temporal Lobe	brain
27	chr21:15588000-15589600	Active TSS	Brain Substantia Nigra	brain
28	chr21:15588000-15589600	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr21:15588000-15589800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr21:15588200-15588800	Active TSS	Primary T cells from cord blood	blood
31	chr21:15588200-15588800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
32	chr21:15588200-15588800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
33	chr21:15588200-15588800	Active TSS	Muscle Satellite Cultured Cells	--
34	chr21:15588200-15588800	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr21:15588200-15588800	Active TSS	Colon Smooth Muscle	Colon
36	chr21:15588200-15588800	Active TSS	Pancreas	Pancrea
37	chr21:15588200-15588800	Bivalent/Poised TSS	Right Ventricle	heart
38	chr21:15588200-15588800	Active TSS	NHEK	skin
39	chr21:15588200-15589000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr21:15588200-15589000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr21:15588200-15589000	Active TSS	iPS-18 Cell Line	embryonic stem cell
42	chr21:15588200-15589000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr21:15588200-15589000	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
44	chr21:15588200-15589000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
45	chr21:15588200-15589000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr21:15588200-15589000	Active TSS	Colonic Mucosa	Colon
47	chr21:15588200-15589000	Bivalent/Poised TSS	Esophagus	oesophagus
48	chr21:15588200-15589000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
49	chr21:15588200-15589000	Active TSS	Fetal Intestine Large	intestine
50	chr21:15588200-15589000	Active TSS	Gastric	stomach

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