Variant report

Variant	rs577771109
Chromosome Location	chr9:26614230-26614231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:27)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:27 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:26614140-26614290	GM12868	blood:	n/a	n/a
2	CTCF	chr9:26613721-26614329	A549	lung:	n/a	n/a
3	CTCF	chr9:26614160-26614310	HFF	foreskin:	n/a	n/a
4	CTCF	chr9:26614140-26614290	GM06990	blood:	n/a	n/a
5	CTCF	chr9:26614140-26614290	HCM	heart:	n/a	n/a
6	CTCF	chr9:26613762-26614273	K562	blood:	n/a	n/a
7	CTCF	chr9:26614080-26614230	NHEK	skin:	n/a	n/a
8	CTCF	chr9:26614140-26614290	HPAF	blood vessel:	n/a	n/a
9	CTCF	chr9:26614100-26614250	GM12867	blood:	n/a	n/a
10	CTCF	chr9:26614140-26614290	HCT-116	colon:	n/a	n/a
11	CTCF	chr9:26614140-26614290	A549	lung:	n/a	n/a
12	CTCF	chr9:26614140-26614290	BE2_C	brain:	n/a	n/a
13	CTCF	chr9:26614200-26614350	AG09309	skin:	n/a	n/a
14	CTCF	chr9:26614100-26614250	HMF	breast:	n/a	n/a
15	CTCF	chr9:26614100-26614250	GM12866	blood:	n/a	n/a
16	CTCF	chr9:26614100-26614250	GM12864	blood:	n/a	n/a
17	CTCF	chr9:26614140-26614290	HEEpiC	esophagus:	n/a	n/a
18	CTCF	chr9:26614120-26614270	HFF-Myc	foreskin:	n/a	n/a
19	CTCF	chr9:26613846-26614230	A549	lung:	n/a	n/a
20	RAD21	chr9:26613781-26614235	HepG2	liver:	n/a	n/a
21	CTCF	chr9:26613927-26614238	K562	blood:	n/a	n/a
22	CTCF	chr9:26614160-26614310	HVMF	connective:	n/a	n/a
23	CTCF	chr9:26614140-26614290	GM12873	blood:	n/a	n/a
24	CTCF	chr9:26614120-26614270	HRPEpiC	eye:	n/a	n/a
25	RAD21	chr9:26613734-26614281	SK-N-SH	brain:	n/a	n/a
26	CTCF	chr9:26614120-26614270	K562	blood:	n/a	n/a
27	CTCF	chr9:26614140-26614290	GM12865	blood:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000266429	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995049	chr9:26162115-26760535	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv892854	chr9:26326100-26749094	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1022674	chr9:26453723-26668102	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1020439	chr9:26453723-26669855	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1022289	chr9:26453723-26670583	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv892857	chr9:26593785-26633841	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
7	nsv6508	chr9:26602437-26647117	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv892858	chr9:26609613-26783463	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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