Variant report

Variant	rs577832515
Chromosome Location	chr5:14753821-14753822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr5:14753247-14753886	HepG2	liver:	n/a	n/a
2	ARID3A	chr5:14753268-14753821	HepG2	liver:	n/a	n/a
3	TCF7L2	chr5:14753313-14754210	HepG2	liver:	n/a	n/a
4	EP300	chr5:14753188-14753885	HepG2	liver:	n/a	n/a
5	MYBL2	chr5:14753288-14753848	HepG2	liver:	n/a	n/a
6	TEAD4	chr5:14753214-14753903	HepG2	liver:	n/a	n/a
7	POLR2A	chr5:14752858-14754372	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:14753133..14755673-chr5:14756895..14759517,2	MCF-7	breast:

Variant related genes	Relation type
ANKH	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3400668	chr5:14753642-14754007	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14725400-14758600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:14727200-14757000	Weak transcription	NHLF	lung
3	chr5:14729200-14791000	Weak transcription	Small Intestine	intestine
4	chr5:14730000-14758400	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr5:14736600-14760000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr5:14736800-14757400	Strong transcription	Duodenum Mucosa	Duodenum
7	chr5:14737000-14754200	Strong transcription	Liver	Liver
8	chr5:14737800-14759200	Strong transcription	Primary T helper cells PMA-I stimulated	--
9	chr5:14737800-14759400	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr5:14740800-14755200	Weak transcription	NHDF-Ad	bronchial
11	chr5:14741600-14767800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr5:14742800-14756600	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr5:14742800-14758400	Strong transcription	Primary T cells from cord blood	blood
14	chr5:14743000-14756800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr5:14744200-14757400	Strong transcription	Dnd41	blood
16	chr5:14744600-14758600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:14744600-14761800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:14744600-14775800	Weak transcription	NH-A	brain
19	chr5:14744800-14757200	Weak transcription	HUVEC	blood vessel
20	chr5:14744800-14776000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr5:14745000-14754600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr5:14745000-14756200	Strong transcription	Osteobl	bone
23	chr5:14745800-14757800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr5:14746000-14790200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr5:14746200-14760200	Weak transcription	Fetal Muscle Leg	muscle
26	chr5:14746200-14762400	Weak transcription	GM12878-XiMat	blood
27	chr5:14746200-14775800	Weak transcription	Spleen	Spleen
28	chr5:14746400-14768000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr5:14746600-14754000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr5:14746600-14776000	Weak transcription	Placenta	Placenta
31	chr5:14747600-14754400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr5:14748800-14760000	Weak transcription	Fetal Muscle Trunk	muscle
33	chr5:14749000-14776000	Weak transcription	Esophagus	oesophagus
34	chr5:14750000-14754000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr5:14750000-14758400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr5:14750200-14754200	Weak transcription	HMEC	breast
37	chr5:14751000-14755600	Weak transcription	Brain Germinal Matrix	brain
38	chr5:14751000-14758600	Strong transcription	Fetal Intestine Small	intestine
39	chr5:14751200-14754600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr5:14751200-14754600	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr5:14751200-14755400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr5:14751200-14760400	Weak transcription	HSMMtube	muscle
43	chr5:14751200-14762400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr5:14751400-14755400	Weak transcription	Fetal Stomach	stomach
45	chr5:14751400-14758200	Weak transcription	Colonic Mucosa	Colon
46	chr5:14751400-14761600	Weak transcription	Primary B cells from peripheral blood	blood
47	chr5:14751400-14775800	Weak transcription	Pancreas	Pancrea
48	chr5:14751600-14754200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr5:14751600-14768000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr5:14751800-14756000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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