Variant report

Variant	rs577859352
Chromosome Location	chr7:149410650-149410651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr7:149410362-149411829	K562	blood:	n/a	chr7:149411590-149411614

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:149409957..149411791-chr7:149503300..149505720,2	K562	blood:
2	chr7:149319988..149323136-chr7:149410219..149413557,5	MCF-7	breast:
3	chr7:149404563..149406665-chr7:149410046..149411714,2	MCF-7	breast:
4	chr7:149395110..149397446-chr7:149409565..149411278,3	K562	blood:
5	chr7:149399650..149401468-chr7:149408675..149410653,2	K562	blood:
6	chr7:149395351..149398006-chr7:149410098..149411759,2	MCF-7	breast:

No data

Variant related genes	Relation type
KRBA1	TF binding region
ENSG00000133624	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021849	chr7:149230929-149422239	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1034350	chr7:149264094-149666356	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv539190	chr7:149264094-149666356	Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv1023901	chr7:149364044-149747442	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv539191	chr7:149364044-149747442	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
6	nsv469576	chr7:149379626-149563233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1031581	chr7:149386249-149570178	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv539192	chr7:149386249-149570178	Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv465199	chr7:149398065-149462621	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv608979	chr7:149398065-149462621	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	esv3359659	chr7:149410544-149413392	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:149409200-149411200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:149409400-149411000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:149410200-149411000	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr7:149410200-149411000	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr7:149410400-149410800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:149410400-149411000	Weak transcription	Pancreas	Pancrea
7	chr7:149410400-149411000	Weak transcription	HepG2	liver
8	chr7:149410400-149411200	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr7:149410400-149412200	Enhancers	Fetal Brain Male	brain
10	chr7:149410600-149410800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr7:149410600-149410800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr7:149410600-149410800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:149410600-149410800	Enhancers	Adipose Nuclei	Adipose
14	chr7:149410600-149410800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr7:149410600-149411000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:149410600-149411000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
17	chr7:149410600-149411000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
18	chr7:149410600-149411000	ZNF genes & repeats	Fetal Muscle Leg	muscle
19	chr7:149410600-149411000	Bivalent Enhancer	Placenta	Placenta
20	chr7:149410600-149411200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr7:149410600-149411400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell

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