Variant report

Variant	rs577865535
Chromosome Location	chr3:56830496-56830497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876818	chr3:56805376-56924711	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv3392720	chr3:56829812-56833210	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56807000-56833200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:56818600-56832000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:56819200-56834400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr3:56820600-56834600	Weak transcription	NHDF-Ad	bronchial
5	chr3:56822400-56833200	Weak transcription	Fetal Stomach	stomach
6	chr3:56822800-56833200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:56823400-56833200	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:56825000-56831800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:56825200-56832000	Weak transcription	Brain Substantia Nigra	brain
10	chr3:56825400-56831800	Weak transcription	NHEK	skin
11	chr3:56825600-56832400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:56826400-56833200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr3:56826600-56830600	Weak transcription	Gastric	stomach
14	chr3:56826600-56830600	Weak transcription	Ovary	ovary
15	chr3:56826600-56831000	Weak transcription	Spleen	Spleen
16	chr3:56826600-56831800	Weak transcription	Psoas Muscle	Psoas
17	chr3:56826800-56830800	Weak transcription	Brain Anterior Caudate	brain
18	chr3:56827400-56834400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr3:56827600-56831200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:56827800-56831200	Enhancers	Pancreas	Pancrea
21	chr3:56828000-56830600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:56828000-56830600	Genic enhancers	Thymus	Thymus
23	chr3:56828000-56831000	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr3:56828200-56832400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:56828400-56830600	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr3:56828600-56831400	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr3:56829000-56830600	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr3:56829000-56830800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:56829000-56830800	Enhancers	Adipose Nuclei	Adipose
30	chr3:56829000-56831000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:56829000-56831000	Enhancers	Fetal Lung	lung
32	chr3:56829000-56831000	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr3:56829000-56831200	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr3:56829000-56831200	Enhancers	Placenta	Placenta
35	chr3:56829000-56831200	Enhancers	Left Ventricle	heart
36	chr3:56829000-56832000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr3:56829000-56832400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr3:56829000-56832400	Enhancers	Colon Smooth Muscle	Colon
39	chr3:56829000-56832400	Genic enhancers	Fetal Thymus	thymus
40	chr3:56829000-56832600	Enhancers	HepG2	liver
41	chr3:56829000-56833200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr3:56829000-56833200	Enhancers	Stomach Mucosa	stomach
43	chr3:56829200-56830800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr3:56829200-56830800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr3:56829200-56830800	Enhancers	HSMMtube	muscle
46	chr3:56829200-56831200	Enhancers	Osteobl	bone
47	chr3:56829200-56831600	Genic enhancers	Primary T cells from cord blood	blood
48	chr3:56829200-56831800	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
49	chr3:56829400-56830600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr3:56829400-56832000	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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