Variant report

Variant	rs577872957
Chromosome Location	chr9:108476199-108476200
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:108475942-108476329	K562	blood:	n/a	n/a
2	CTCF	chr9:108476140-108476290	GM12878	blood:	n/a	n/a
3	ZNF263	chr9:108475610-108476664	K562	blood:	n/a	n/a
4	POLR2A	chr9:108476198-108476372	MCF-7	breast:	n/a	n/a
5	ZNF263	chr9:108476019-108476744	HEK293-T-REx	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108471863..108473966-chr9:108475296..108477111,2	K562	blood:
2	chr9:108474643..108476985-chr9:108479080..108480662,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228366	TF binding region
ENSG00000228366	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv615116	chr9:108468129-108546438	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv3483735	chr9:108476172-108479062	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	esv3528485	chr9:108476198-108479163	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108457800-108476200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:108457800-108492200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr9:108458000-108479200	Weak transcription	Fetal Brain Male	brain
4	chr9:108458000-108497800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr9:108458200-108476400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:108458200-108478800	Weak transcription	Brain Hippocampus Middle	brain
7	chr9:108458200-108480800	Weak transcription	Brain Angular Gyrus	brain
8	chr9:108458200-108491400	Weak transcription	HSMMtube	muscle
9	chr9:108458200-108491600	Weak transcription	Brain Anterior Caudate	brain
10	chr9:108458200-108495400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:108458200-108497000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:108459200-108489400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr9:108463200-108478400	Weak transcription	Hela-S3	cervix
14	chr9:108463200-108496800	Weak transcription	HepG2	liver
15	chr9:108463400-108487600	Weak transcription	Primary B cells from cord blood	blood
16	chr9:108465000-108496600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr9:108465600-108476200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:108466200-108476200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr9:108466800-108478400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr9:108469000-108476200	Weak transcription	Primary B cells from peripheral blood	blood
21	chr9:108469000-108485000	Weak transcription	Small Intestine	intestine
22	chr9:108469200-108478000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr9:108469800-108476400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr9:108470600-108497000	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr9:108470800-108487200	Weak transcription	Liver	Liver
26	chr9:108470800-108496000	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr9:108471000-108476400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:108471000-108495400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr9:108471200-108481600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr9:108471400-108477600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr9:108471400-108479200	Weak transcription	Esophagus	oesophagus
32	chr9:108472000-108476600	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr9:108472200-108476400	Weak transcription	Brain Substantia Nigra	brain
34	chr9:108473200-108476800	Weak transcription	Dnd41	blood
35	chr9:108473200-108478400	Weak transcription	K562	blood
36	chr9:108473200-108478800	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr9:108473200-108487200	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr9:108473200-108490800	Weak transcription	Fetal Lung	lung
39	chr9:108473200-108496400	Weak transcription	Primary T cells from cord blood	blood
40	chr9:108473200-108497200	Weak transcription	Duodenum Mucosa	Duodenum
41	chr9:108473200-108499800	Weak transcription	Gastric	stomach
42	chr9:108473400-108492200	Weak transcription	GM12878-XiMat	blood
43	chr9:108474000-108477000	Weak transcription	Right Atrium	heart
44	chr9:108474200-108476800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr9:108474600-108476200	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr9:108475000-108476200	Enhancers	Psoas Muscle	Psoas
47	chr9:108475000-108476200	Enhancers	Right Ventricle	heart
48	chr9:108475000-108476400	Enhancers	Left Ventricle	heart
49	chr9:108475000-108476600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr9:108475000-108477400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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