The 2.0 version of rSNPBase

Variant report

Variant rs57789890
Chromosome Location chr2:86137562-86137563
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:86128600-86141200 Weak transcription Primary T cells from cord blood blood
2 chr2:86129800-86137800 Weak transcription NHDF-Ad bronchial
3 chr2:86129800-86138000 Weak transcription Fetal Thymus thymus
4 chr2:86129800-86141400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr2:86130600-86138000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
6 chr2:86131400-86137800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
7 chr2:86131400-86142400 Weak transcription Esophagus oesophagus
8 chr2:86131800-86141600 Weak transcription Primary B cells from peripheral blood blood
9 chr2:86133200-86137600 Weak transcription Brain Inferior Temporal Lobe brain
10 chr2:86133200-86137800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
11 chr2:86133200-86137800 Weak transcription Brain Cingulate Gyrus brain
12 chr2:86133200-86137800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
13 chr2:86133200-86139200 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr2:86133200-86142800 Weak transcription Colon Smooth Muscle Colon
15 chr2:86133200-86149200 Weak transcription Stomach Smooth Muscle stomach
16 chr2:86133200-86152000 Weak transcription Skeletal Muscle Female skeletal muscle
17 chr2:86133800-86139000 Weak transcription Cortex derived primary cultured neurospheres brain
18 chr2:86134400-86148000 Weak transcription Thymus Thymus
19 chr2:86134600-86137800 Weak transcription Brain Substantia Nigra brain
20 chr2:86135200-86138000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr2:86135200-86138200 Weak transcription Right Atrium heart
22 chr2:86135200-86139600 Weak transcription Stomach Mucosa stomach
23 chr2:86135400-86138200 Weak transcription Placenta Placenta
24 chr2:86135400-86138400 Weak transcription Osteobl bone
25 chr2:86135400-86138800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
26 chr2:86135400-86143800 Weak transcription Spleen Spleen
27 chr2:86135400-86148000 Weak transcription Pancreas Pancrea
28 chr2:86135400-86151600 Weak transcription Fetal Muscle Trunk muscle
29 chr2:86135400-86151600 Weak transcription Lung lung
30 chr2:86135400-86152600 Weak transcription Psoas Muscle Psoas
31 chr2:86135600-86137800 Weak transcription HSMM muscle
32 chr2:86135600-86138000 Weak transcription HSMMtube muscle
33 chr2:86135600-86138400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
34 chr2:86135600-86139000 Weak transcription Breast Myoepithelial Primary Cells Breast
35 chr2:86135800-86137800 Weak transcription Fetal Adrenal Gland Adrenal Gland
36 chr2:86135800-86138000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr2:86135800-86138000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
38 chr2:86135800-86138400 Weak transcription K562 blood
39 chr2:86135800-86138800 Weak transcription Muscle Satellite Cultured Cells --
40 chr2:86136200-86139000 Weak transcription NH-A brain
41 chr2:86136200-86139200 Weak transcription ES-I3 Cell Line embryonic stem cell
42 chr2:86136600-86137800 Weak transcription A549 lung
43 chr2:86136800-86137800 Weak transcription Brain Hippocampus Middle brain
44 chr2:86136800-86137800 Weak transcription HMEC breast
45 chr2:86136800-86137800 Weak transcription NHEK skin
46 chr2:86136800-86138000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
47 chr2:86136800-86138000 Weak transcription Brain Anterior Caudate brain
48 chr2:86137000-86139200 Weak transcription Brain Angular Gyrus brain
49 chr2:86137200-86137600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
50 chr2:86137400-86138000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015