Variant report
| Variant | rs57789957 |
|---|---|
| Chromosome Location | chr3:158928621-158928622 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:158924022..158926235-chr3:158926252..158928979,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs2365480 | 1.00[EUR][1000 genomes] |
| rs2365481 | 1.00[EUR][1000 genomes] |
| rs55989643 | 1.00[EUR][1000 genomes] |
| rs56680876 | 1.00[EUR][1000 genomes] |
| rs56791207 | 1.00[EUR][1000 genomes] |
| rs57279778 | 1.00[EUR][1000 genomes] |
| rs59076814 | 1.00[AMR][1000 genomes] |
| rs59185941 | 1.00[EUR][1000 genomes] |
| rs59229685 | 1.00[EUR][1000 genomes] |
| rs6793688 | 1.00[EUR][1000 genomes] |
| rs73877533 | 1.00[EUR][1000 genomes] |
| rs73877535 | 1.00[EUR][1000 genomes] |
| rs73877536 | 1.00[EUR][1000 genomes] |
| rs73877541 | 1.00[EUR][1000 genomes] |
| rs73877542 | 1.00[EUR][1000 genomes] |
| rs73877543 | 1.00[EUR][1000 genomes] |
| rs73877546 | 1.00[EUR][1000 genomes] |
| rs73877548 | 1.00[EUR][1000 genomes] |
| rs7628986 | 1.00[EUR][1000 genomes] |
| rs7650928 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7651706 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530059 | chr3:158332590-159147549 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv470971 | chr3:158590928-159158217 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv3426016 | chr3:158676623-158979242 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv491927 | chr3:158692653-158952780 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv998949 | chr3:158774806-159394550 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 6 | nsv1012602 | chr3:158800182-159031618 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionmiRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:158927400-158929000 | Enhancers | Muscle Satellite Cultured Cells | -- |
