Variant report

Variant	rs57792399
Chromosome Location	chr8:111700014-111700015
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10505147	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10505149	0.88[EUR][1000 genomes]
rs11784133	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11991460	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11991593	0.85[EUR][1000 genomes]
rs11994387	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995224	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997623	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13248174	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13248958	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13250757	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13254072	1.00[ASN][1000 genomes]
rs13254571	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13255968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13256480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13272419	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1353209	0.87[EUR][1000 genomes]
rs1494241	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1587014	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16880946	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16880947	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16880951	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16881009	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16881028	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17393840	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34235257	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34267887	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34517324	0.86[EUR][1000 genomes]
rs34526441	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34555166	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34945017	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35157570	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35211908	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35238090	0.88[EUR][1000 genomes]
rs35477724	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35772751	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60679001	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984552	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6996014	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6996577	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998792	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs720965	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73326105	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73328011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838123	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7846423	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv611882	chr8:111342240-111722469	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1031119	chr8:111367939-111720763	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv831422	chr8:111578949-111755170	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1027659	chr8:111585843-111875753	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1025390	chr8:111605571-111806020	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv539718	chr8:111605571-111806020	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv831423	chr8:111672801-111869818	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv1817780	chr8:111694657-111711197	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv1851720	chr8:111694657-111754075	Enhancers Flanking Active TSS Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:111699600-111700200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:111699600-111700200	Enhancers	HMEC	breast
3	chr8:111699800-111700400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:111699800-111700400	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr8:111699800-111704400	Weak transcription	Fetal Intestine Small	intestine

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