Variant report

Variant	rs577929815
Chromosome Location	chr17:63169228-63169229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:63051300..63053869-chr17:63168006..63170478,2	K562	blood:
2	chr17:63117456..63119485-chr17:63168977..63171094,3	K562	blood:
3	chr17:62971936..62973438-chr17:63168218..63170774,2	K562	blood:
4	chr17:63163123..63166330-chr17:63166704..63169557,3	K562	blood:
5	chr17:63168106..63170143-chr17:63186322..63188015,2	MCF-7	breast:
6	chr17:63167995..63174174-chr17:63174484..63177820,5	MCF-7	breast:
7	chr17:63169209..63171609-chr17:63173762..63176573,2	MCF-7	breast:
8	chr17:63106384..63108282-chr17:63168759..63171102,2	K562	blood:
9	chr17:63166945..63171394-chr17:63172281..63178092,5	K562	blood:
10	chr17:63160128..63162121-chr17:63168023..63170188,2	K562	blood:
11	chr17:63158962..63160565-chr17:63168020..63170468,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000120063	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3341476	chr17:63168490-63172688	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63141000-63175200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr17:63143600-63169400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr17:63153600-63175400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr17:63157000-63179800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr17:63157200-63169600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr17:63160000-63180400	Weak transcription	Brain Substantia Nigra	brain
7	chr17:63160600-63169600	Weak transcription	Spleen	Spleen
8	chr17:63160800-63169400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr17:63160800-63169400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr17:63166600-63170000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr17:63166600-63170000	Enhancers	HUVEC	blood vessel
12	chr17:63166600-63170600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr17:63166600-63170600	Enhancers	Fetal Thymus	thymus
14	chr17:63166800-63169400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr17:63167000-63172600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr17:63167200-63170800	Enhancers	Primary hematopoietic stem cells	blood
17	chr17:63167400-63175200	Weak transcription	Brain Germinal Matrix	brain
18	chr17:63167600-63169400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr17:63167600-63169400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr17:63167600-63169400	Weak transcription	Brain Anterior Caudate	brain
21	chr17:63167600-63169400	Weak transcription	Left Ventricle	heart
22	chr17:63167600-63169600	Weak transcription	Fetal Stomach	stomach
23	chr17:63167600-63170800	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr17:63167600-63171400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr17:63167600-63172800	Enhancers	Primary T cells fromperipheralblood	blood
26	chr17:63167600-63175000	Weak transcription	Brain Angular Gyrus	brain
27	chr17:63167800-63169400	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr17:63167800-63169400	Weak transcription	Right Atrium	heart
29	chr17:63167800-63169800	Enhancers	Primary T cells from cord blood	blood
30	chr17:63167800-63170200	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr17:63167800-63171400	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr17:63167800-63172800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr17:63167800-63175000	Weak transcription	Fetal Brain Female	brain
34	chr17:63168000-63169600	Weak transcription	Fetal Lung	lung
35	chr17:63168000-63170600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr17:63168000-63171200	Weak transcription	Fetal Brain Male	brain
37	chr17:63168200-63169400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr17:63168200-63169400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr17:63168200-63169400	Enhancers	Dnd41	blood
40	chr17:63168200-63169600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr17:63168200-63169600	Weak transcription	Lung	lung
42	chr17:63168200-63170000	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr17:63168200-63170600	Weak transcription	Pancreas	Pancrea
44	chr17:63168600-63170200	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr17:63168800-63169800	Enhancers	Duodenum Mucosa	Duodenum
46	chr17:63168800-63170200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr17:63168800-63170200	Enhancers	Stomach Smooth Muscle	stomach
48	chr17:63168800-63170200	Enhancers	A549	lung
49	chr17:63169000-63171200	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr17:63169000-63172000	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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