Variant report

Variant	rs577935
Chromosome Location	chr1:149885583-149885584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:149884655..149886834-chr1:150138029..150140460,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs626785	1.00[CHD][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432820	chr1:148921404-149920927	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	784 gene(s)	inside rSNPs	diseases
2	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149871800-149887400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:149872000-149887400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:149872000-149887600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:149872000-149887600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr1:149872000-149887800	Weak transcription	HSMMtube	muscle
6	chr1:149872200-149885600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr1:149872200-149887400	Weak transcription	Right Atrium	heart
8	chr1:149872200-149887600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr1:149872200-149887600	Weak transcription	NH-A	brain
10	chr1:149872200-149887800	Weak transcription	Placenta	Placenta
11	chr1:149872200-149888000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:149872200-149888200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr1:149872200-149888400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:149872200-149888400	Weak transcription	Esophagus	oesophagus
15	chr1:149872400-149885800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr1:149872400-149887400	Weak transcription	Spleen	Spleen
17	chr1:149872400-149887600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr1:149872400-149888200	Weak transcription	Colon Smooth Muscle	Colon
19	chr1:149872400-149888400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:149872400-149888400	Weak transcription	Right Ventricle	heart
21	chr1:149872600-149886000	Weak transcription	Primary T cells from cord blood	blood
22	chr1:149872600-149886000	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr1:149872600-149887200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr1:149872600-149887200	Weak transcription	Fetal Kidney	kidney
25	chr1:149872600-149887400	Weak transcription	Fetal Lung	lung
26	chr1:149872600-149888200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr1:149874800-149885600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr1:149874800-149885800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr1:149875000-149885600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr1:149875000-149885600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr1:149875000-149885600	Strong transcription	Fetal Stomach	stomach
32	chr1:149875000-149886000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr1:149875000-149886200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr1:149875200-149885600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr1:149875200-149887400	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr1:149875400-149885600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr1:149875400-149885600	Strong transcription	Brain Hippocampus Middle	brain
38	chr1:149875400-149885800	Strong transcription	Brain Inferior Temporal Lobe	brain
39	chr1:149875600-149886000	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr1:149876000-149885800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr1:149876200-149885600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr1:149876200-149885800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr1:149876200-149885800	Strong transcription	Thymus	Thymus
44	chr1:149876200-149886000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr1:149876200-149887600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr1:149876600-149887600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr1:149876600-149888400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr1:149876800-149885800	Weak transcription	Fetal Thymus	thymus
49	chr1:149878400-149886000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr1:149878400-149888800	Weak transcription	Gastric	stomach

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