Variant report

Variant	rs57794067
Chromosome Location	chr11:72466449-72466450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72461925..72464925-chr11:72465521..72468499,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000186635	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12287469	0.81[AMR][1000 genomes]
rs12289257	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806140	chr11:72268466-72546175	Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
2	nsv832207	chr11:72272750-72469122	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
3	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72464000-72466800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:72464000-72469800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:72464000-72469800	Weak transcription	Right Atrium	heart
4	chr11:72464200-72467800	Genic enhancers	Fetal Intestine Small	intestine
5	chr11:72464200-72469000	Weak transcription	Thymus	Thymus
6	chr11:72464200-72469800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:72464200-72469800	Weak transcription	Fetal Kidney	kidney
8	chr11:72464200-72469800	Weak transcription	Fetal Lung	lung
9	chr11:72464200-72470000	Weak transcription	Fetal Brain Male	brain
10	chr11:72464200-72470200	Weak transcription	Left Ventricle	heart
11	chr11:72464200-72475200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:72464400-72467000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:72464400-72467000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:72464400-72467000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:72464400-72467200	Weak transcription	Brain Anterior Caudate	brain
16	chr11:72464400-72468400	Weak transcription	Primary T cells from cord blood	blood
17	chr11:72464400-72469200	Weak transcription	NHLF	lung
18	chr11:72464400-72469200	Weak transcription	Osteobl	bone
19	chr11:72464400-72469400	Weak transcription	HSMM	muscle
20	chr11:72464400-72469800	Weak transcription	HSMMtube	muscle
21	chr11:72464400-72470000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr11:72464400-72475200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr11:72464400-72475200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr11:72464400-72479200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr11:72464400-72483600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:72464400-72491400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr11:72464600-72466800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr11:72464600-72467000	Weak transcription	Duodenum Mucosa	Duodenum
29	chr11:72464600-72467400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr11:72464600-72467800	Genic enhancers	Fetal Intestine Large	intestine
31	chr11:72464600-72468200	Weak transcription	Colon Smooth Muscle	Colon
32	chr11:72464600-72468600	Weak transcription	Ovary	ovary
33	chr11:72464600-72469400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:72464600-72469400	Strong transcription	Fetal Stomach	stomach
35	chr11:72464600-72469400	Weak transcription	NHDF-Ad	bronchial
36	chr11:72464600-72469800	Weak transcription	Adipose Nuclei	Adipose
37	chr11:72464600-72469800	Weak transcription	Brain Substantia Nigra	brain
38	chr11:72464600-72472000	Weak transcription	Hela-S3	cervix
39	chr11:72464600-72473200	Weak transcription	GM12878-XiMat	blood
40	chr11:72464600-72473400	Weak transcription	Primary B cells from peripheral blood	blood
41	chr11:72464600-72473600	Weak transcription	Primary B cells from cord blood	blood
42	chr11:72464600-72492000	Weak transcription	Primary hematopoietic stem cells	blood
43	chr11:72464800-72466600	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr11:72464800-72467600	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr11:72464800-72468800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr11:72464800-72469200	Weak transcription	NHEK	skin
47	chr11:72464800-72469400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr11:72464800-72469400	Weak transcription	A549	lung
49	chr11:72464800-72469800	Strong transcription	Fetal Brain Female	brain
50	chr11:72464800-72473600	Weak transcription	Primary T cells fromperipheralblood	blood

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