Variant report

Variant	rs57794870
Chromosome Location	chr1:57125491-57125492
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7516242	0.81[AFR][1000 genomes]
rs7553387	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv523032	chr1:57116909-57249558	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57120000-57126600	Weak transcription	Right Ventricle	heart
2	chr1:57120000-57132800	Weak transcription	Right Atrium	heart
3	chr1:57122400-57129200	Weak transcription	Psoas Muscle	Psoas
4	chr1:57122800-57126600	Weak transcription	Left Ventricle	heart
5	chr1:57122800-57128600	Weak transcription	HepG2	liver
6	chr1:57122800-57169600	Weak transcription	Ovary	ovary
7	chr1:57123000-57131400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr1:57123000-57141800	Weak transcription	Hela-S3	cervix
9	chr1:57123000-57142000	Weak transcription	A549	lung
10	chr1:57123000-57143400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:57124200-57126200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr1:57125400-57125600	ZNF genes & repeats	Aorta	Aorta
13	chr1:57125400-57126400	Enhancers	Fetal Heart	heart
14	chr1:57125400-57126600	Weak transcription	Gastric	stomach
15	chr1:57125400-57127200	Enhancers	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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